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PCGF3 (polycomb group ring finger 3)

Identity

Alias_namesRNF3
ring finger protein 3
Alias_symbol (synonym)FLJ36550
DONG1
RNF3A
MGC40413
Other alias
HGNC (Hugo) PCGF3
LocusID (NCBI) 10336
Atlas_Id 47262
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 705741 and ends at 770980 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COX10 (17p12) / PCGF3 (4p16.3)HS2ST1 (1p22.3) / PCGF3 (4p16.3)PCGF3 (4p16.3) / FAM156B (Xp11.22)
PCGF3 (4p16.3) / FANCI (15q26.1)PCGF3 (4p16.3) / NCOA1 (2p23.3)PCGF3 (4p16.3) / NEAT1 (11q13.1)
PCGF3 (4p16.3) / PIGG (4p16.3)PCGF3 (4p16.3) / STAG3L3 (7q11.23)PCGF3 (4p16.3) / SYVN1 (11q13.1)
PCGF3 4p16.3 / FANCI 15q26.1PCGF3 4p16.3 / PIGG 4p16.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCGF3   10066
Cards
Entrez_Gene (NCBI)PCGF3  10336  polycomb group ring finger 3
AliasesDONG1; RNF3; RNF3A
GeneCards (Weizmann)PCGF3
Ensembl hg19 (Hinxton)ENSG00000185619 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185619 [Gene_View]  chr4:705741-770980 [Contig_View]  PCGF3 [Vega]
ICGC DataPortalENSG00000185619
TCGA cBioPortalPCGF3
AceView (NCBI)PCGF3
Genatlas (Paris)PCGF3
WikiGenes10336
SOURCE (Princeton)PCGF3
Genetics Home Reference (NIH)PCGF3
Genomic and cartography
GoldenPath hg38 (UCSC)PCGF3  -     chr4:705741-770980 +  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCGF3  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblPCGF3 - 4p16.3 [CytoView hg19]  PCGF3 - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIPCGF3 [Mapview hg19]  PCGF3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA401257 AK057124 AK125801 AK225892 AK300290
RefSeq transcript (Entrez)NM_001317836 NM_006315
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCGF3
Cluster EST : UnigeneHs.731755 [ NCBI ]
CGAP (NCI)Hs.731755
Alternative Splicing GalleryENSG00000185619
Gene ExpressionPCGF3 [ NCBI-GEO ]   PCGF3 [ EBI - ARRAY_EXPRESS ]   PCGF3 [ SEEK ]   PCGF3 [ MEM ]
Gene Expression Viewer (FireBrowse)PCGF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10336
GTEX Portal (Tissue expression)PCGF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KNV8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KNV8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KNV8
Splice isoforms : SwissVarQ3KNV8
PhosPhoSitePlusQ3KNV8
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)RAWUL    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)RAWUL (PF16207)   
Domain families : Pfam (NCBI)pfam16207   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)PCGF3
DMDM Disease mutations10336
Blocks (Seattle)PCGF3
SuperfamilyQ3KNV8
Human Protein AtlasENSG00000185619
Peptide AtlasQ3KNV8
HPRD11515
IPIIPI00827991   IPI01015659   IPI00007279   IPI00168563   IPI00877857   IPI00878168   IPI00879673   IPI00880182   IPI00879042   
Protein Interaction databases
DIP (DOE-UCLA)Q3KNV8
IntAct (EBI)Q3KNV8
FunCoupENSG00000185619
BioGRIDPCGF3
STRING (EMBL)PCGF3
ZODIACPCGF3
Ontologies - Pathways
QuickGOQ3KNV8
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  PcG protein complex  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  PcG protein complex  
NDEx NetworkPCGF3
Atlas of Cancer Signalling NetworkPCGF3
Wikipedia pathwaysPCGF3
Orthology - Evolution
OrthoDB10336
GeneTree (enSembl)ENSG00000185619
Phylogenetic Trees/Animal Genes : TreeFamPCGF3
HOVERGENQ3KNV8
HOGENOMQ3KNV8
Homologs : HomoloGenePCGF3
Homology/Alignments : Family Browser (UCSC)PCGF3
Gene fusions - Rearrangements
Fusion : MitelmanPCGF3/FANCI [4p16.3/15q26.1]  
Fusion : MitelmanPCGF3/PIGG [4p16.3/4p16.3]  [t(4;4)(p16;p16)]  
Fusion: TCGAPCGF3 4p16.3 FANCI 15q26.1 LUSC
Fusion: TCGAPCGF3 4p16.3 PIGG 4p16.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCGF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCGF3
dbVarPCGF3
ClinVarPCGF3
1000_GenomesPCGF3 
Exome Variant ServerPCGF3
ExAC (Exome Aggregation Consortium)PCGF3 (select the gene name)
Genetic variants : HAPMAP10336
Genomic Variants (DGV)PCGF3 [DGVbeta]
DECIPHERPCGF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCGF3 
Mutations
ICGC Data PortalPCGF3 
TCGA Data PortalPCGF3 
Broad Tumor PortalPCGF3
OASIS PortalPCGF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCGF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCGF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCGF3
DgiDB (Drug Gene Interaction Database)PCGF3
DoCM (Curated mutations)PCGF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCGF3 (select a term)
intoGenPCGF3
Cancer3DPCGF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPCGF3
Genetic Testing Registry PCGF3
NextProtQ3KNV8 [Medical]
TSGene10336
GENETestsPCGF3
Target ValidationPCGF3
Huge Navigator PCGF3 [HugePedia]
snp3D : Map Gene to Disease10336
BioCentury BCIQPCGF3
ClinGenPCGF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10336
Chemical/Pharm GKB GenePA34433
Clinical trialPCGF3
Miscellaneous
canSAR (ICR)PCGF3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCGF3
EVEXPCGF3
GoPubMedPCGF3
iHOPPCGF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:48:46 CEST 2017

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