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PCGF5 (polycomb group ring finger 5)

Identity

Alias_namesRNF159
ring finger protein (C3HC4 type) 159
Alias_symbol (synonym)MGC16202
Other alias
HGNC (Hugo) PCGF5
LocusID (NCBI) 84333
Atlas_Id 46683
Location 10q23.32  [Link to chromosome band 10q23]
Location_base_pair Starts at 92979908 and ends at 93044088 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CASP8 (2q33.1) / PCGF5 (10q23.32)HECTD2 (10q23.32) / PCGF5 (10q23.32)TRPS1 (8q23.3) / PCGF5 (10q23.32)
HECTD2 10q23.32 / PCGF5 10q23.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCGF5   28264
Cards
Entrez_Gene (NCBI)PCGF5  84333  polycomb group ring finger 5
AliasesRNF159
GeneCards (Weizmann)PCGF5
Ensembl hg19 (Hinxton)ENSG00000180628 [Gene_View]  chr10:92979908-93044088 [Contig_View]  PCGF5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180628 [Gene_View]  chr10:92979908-93044088 [Contig_View]  PCGF5 [Vega]
ICGC DataPortalENSG00000180628
TCGA cBioPortalPCGF5
AceView (NCBI)PCGF5
Genatlas (Paris)PCGF5
WikiGenes84333
SOURCE (Princeton)PCGF5
Genetics Home Reference (NIH)PCGF5
Genomic and cartography
GoldenPath hg19 (UCSC)PCGF5  -     chr10:92979908-93044088 +  10q23.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCGF5  -     10q23.32   [Description]    (hg38-Dec_2013)
EnsemblPCGF5 - 10q23.32 [CytoView hg19]  PCGF5 - 10q23.32 [CytoView hg38]
Mapping of homologs : NCBIPCGF5 [Mapview hg19]  PCGF5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055625 AK303014 AL832003 AL832496 AM393626
RefSeq transcript (Entrez)NM_001256549 NM_001257101 NM_032373
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)PCGF5
Cluster EST : UnigeneHs.500512 [ NCBI ]
CGAP (NCI)Hs.500512
Alternative Splicing GalleryENSG00000180628
Gene ExpressionPCGF5 [ NCBI-GEO ]   PCGF5 [ EBI - ARRAY_EXPRESS ]   PCGF5 [ SEEK ]   PCGF5 [ MEM ]
Gene Expression Viewer (FireBrowse)PCGF5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84333
GTEX Portal (Tissue expression)PCGF5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SE9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SE9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SE9
Splice isoforms : SwissVarQ86SE9
PhosPhoSitePlusQ86SE9
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)RAWUL    Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)RAWUL (PF16207)    zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam16207    pfam00097   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)PCGF5
DMDM Disease mutations84333
Blocks (Seattle)PCGF5
PDB (SRS)4S3O   
PDB (PDBSum)4S3O   
PDB (IMB)4S3O   
PDB (RSDB)4S3O   
Structural Biology KnowledgeBase4S3O   
SCOP (Structural Classification of Proteins)4S3O   
CATH (Classification of proteins structures)4S3O   
SuperfamilyQ86SE9
Human Protein AtlasENSG00000180628
Peptide AtlasQ86SE9
HPRD17825
IPIIPI00328390   IPI00449145   
Protein Interaction databases
DIP (DOE-UCLA)Q86SE9
IntAct (EBI)Q86SE9
FunCoupENSG00000180628
BioGRIDPCGF5
STRING (EMBL)PCGF5
ZODIACPCGF5
Ontologies - Pathways
QuickGOQ86SE9
Ontology : AmiGOprotein binding  nucleus  nucleolus  centrosome  transcription, DNA-templated  zinc ion binding  PcG protein complex  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  centrosome  transcription, DNA-templated  zinc ion binding  PcG protein complex  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkPCGF5
Atlas of Cancer Signalling NetworkPCGF5
Wikipedia pathwaysPCGF5
Orthology - Evolution
OrthoDB84333
GeneTree (enSembl)ENSG00000180628
Phylogenetic Trees/Animal Genes : TreeFamPCGF5
HOVERGENQ86SE9
HOGENOMQ86SE9
Homologs : HomoloGenePCGF5
Homology/Alignments : Family Browser (UCSC)PCGF5
Gene fusions - Rearrangements
Fusion : MitelmanHECTD2/PCGF5 [10q23.32/10q23.32]  [t(10;10)(q23;q23)]  
Fusion: TCGAHECTD2 10q23.32 PCGF5 10q23.32 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCGF5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCGF5
dbVarPCGF5
ClinVarPCGF5
1000_GenomesPCGF5 
Exome Variant ServerPCGF5
ExAC (Exome Aggregation Consortium)PCGF5 (select the gene name)
Genetic variants : HAPMAP84333
Genomic Variants (DGV)PCGF5 [DGVbeta]
DECIPHER (Syndromes)10:92979908-93044088  ENSG00000180628
CONAN: Copy Number AnalysisPCGF5 
Mutations
ICGC Data PortalPCGF5 
TCGA Data PortalPCGF5 
Broad Tumor PortalPCGF5
OASIS PortalPCGF5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCGF5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCGF5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCGF5
DgiDB (Drug Gene Interaction Database)PCGF5
DoCM (Curated mutations)PCGF5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCGF5 (select a term)
intoGenPCGF5
Cancer3DPCGF5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPCGF5
Genetic Testing Registry PCGF5
NextProtQ86SE9 [Medical]
TSGene84333
GENETestsPCGF5
Huge Navigator PCGF5 [HugePedia]
snp3D : Map Gene to Disease84333
BioCentury BCIQPCGF5
ClinGenPCGF5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84333
Chemical/Pharm GKB GenePA134929149
Clinical trialPCGF5
Miscellaneous
canSAR (ICR)PCGF5 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCGF5
EVEXPCGF5
GoPubMedPCGF5
iHOPPCGF5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:20:40 CET 2017

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