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PCID2 (PCI domain containing 2)

Identity

Alias_symbol (synonym)FLJ11305
Other aliasF10
HGNC (Hugo) PCID2
LocusID (NCBI) 55795
Atlas_Id 71760
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 113177539 and ends at 113208920 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCID2 (13q34) / CUL4A (13q34)PCID2 (13q34) / TRPS1 (8q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCID2   25653
Cards
Entrez_Gene (NCBI)PCID2  55795  PCI domain containing 2
AliasesF10
GeneCards (Weizmann)PCID2
Ensembl hg19 (Hinxton)ENSG00000126226 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126226 [Gene_View]  chr13:113177539-113208920 [Contig_View]  PCID2 [Vega]
ICGC DataPortalENSG00000126226
TCGA cBioPortalPCID2
AceView (NCBI)PCID2
Genatlas (Paris)PCID2
WikiGenes55795
SOURCE (Princeton)PCID2
Genetics Home Reference (NIH)PCID2
Genomic and cartography
GoldenPath hg38 (UCSC)PCID2  -     chr13:113177539-113208920 -  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCID2  -     13q34   [Description]    (hg19-Feb_2009)
EnsemblPCID2 - 13q34 [CytoView hg19]  PCID2 - 13q34 [CytoView hg38]
Mapping of homologs : NCBIPCID2 [Mapview hg19]  PCID2 [Mapview hg38]
OMIM613713   
Gene and transcription
Genbank (Entrez)AA779868 AF183426 AI272719 AK000888 AK001185
RefSeq transcript (Entrez)NM_001127202 NM_001127203 NM_001258212 NM_001258213 NM_001320655 NM_001320656 NM_001320657 NM_001320659 NM_001320660 NM_018386
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCID2
Cluster EST : UnigeneHs.508769 [ NCBI ]
CGAP (NCI)Hs.508769
Alternative Splicing GalleryENSG00000126226
Gene ExpressionPCID2 [ NCBI-GEO ]   PCID2 [ EBI - ARRAY_EXPRESS ]   PCID2 [ SEEK ]   PCID2 [ MEM ]
Gene Expression Viewer (FireBrowse)PCID2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55795
GTEX Portal (Tissue expression)PCID2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JVF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JVF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JVF3
Splice isoforms : SwissVarQ5JVF3
PhosPhoSitePlusQ5JVF3
Domains : Interpro (EBI)PCI_dom   
Domain families : Pfam (Sanger)PCI (PF01399)   
Domain families : Pfam (NCBI)pfam01399   
Conserved Domain (NCBI)PCID2
DMDM Disease mutations55795
Blocks (Seattle)PCID2
PDB (SRS)3T5X   
PDB (PDBSum)3T5X   
PDB (IMB)3T5X   
PDB (RSDB)3T5X   
Structural Biology KnowledgeBase3T5X   
SCOP (Structural Classification of Proteins)3T5X   
CATH (Classification of proteins structures)3T5X   
SuperfamilyQ5JVF3
Human Protein AtlasENSG00000126226
Peptide AtlasQ5JVF3
HPRD07749
IPIIPI00072541   IPI00100313   IPI00941197   IPI01019111   IPI00386728   
Protein Interaction databases
DIP (DOE-UCLA)Q5JVF3
IntAct (EBI)Q5JVF3
FunCoupENSG00000126226
BioGRIDPCID2
STRING (EMBL)PCID2
ZODIACPCID2
Ontologies - Pathways
QuickGOQ5JVF3
Ontology : AmiGOposttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery  double-stranded DNA binding  RNA binding  protein binding  cellular_component  nuclear pore  transcription elongation from RNA polymerase II promoter  poly(A)+ mRNA export from nucleus  transcriptionally active chromatin  negative regulation of apoptotic process  regulation of mRNA stability  positive regulation of B cell differentiation  positive regulation of transcription, DNA-templated  spleen development  transcription export complex 2  nuclear retention of pre-mRNA at the site of transcription  positive regulation of mitotic cell cycle spindle assembly checkpoint  negative regulation of cysteine-type endopeptidase activity  
Ontology : EGO-EBIposttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery  double-stranded DNA binding  RNA binding  protein binding  cellular_component  nuclear pore  transcription elongation from RNA polymerase II promoter  poly(A)+ mRNA export from nucleus  transcriptionally active chromatin  negative regulation of apoptotic process  regulation of mRNA stability  positive regulation of B cell differentiation  positive regulation of transcription, DNA-templated  spleen development  transcription export complex 2  nuclear retention of pre-mRNA at the site of transcription  positive regulation of mitotic cell cycle spindle assembly checkpoint  negative regulation of cysteine-type endopeptidase activity  
NDEx NetworkPCID2
Atlas of Cancer Signalling NetworkPCID2
Wikipedia pathwaysPCID2
Orthology - Evolution
OrthoDB55795
GeneTree (enSembl)ENSG00000126226
Phylogenetic Trees/Animal Genes : TreeFamPCID2
HOVERGENQ5JVF3
HOGENOMQ5JVF3
Homologs : HomoloGenePCID2
Homology/Alignments : Family Browser (UCSC)PCID2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCID2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCID2
dbVarPCID2
ClinVarPCID2
1000_GenomesPCID2 
Exome Variant ServerPCID2
ExAC (Exome Aggregation Consortium)PCID2 (select the gene name)
Genetic variants : HAPMAP55795
Genomic Variants (DGV)PCID2 [DGVbeta]
DECIPHERPCID2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCID2 
Mutations
ICGC Data PortalPCID2 
TCGA Data PortalPCID2 
Broad Tumor PortalPCID2
OASIS PortalPCID2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCID2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCID2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCID2
DgiDB (Drug Gene Interaction Database)PCID2
DoCM (Curated mutations)PCID2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCID2 (select a term)
intoGenPCID2
Cancer3DPCID2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613713   
Orphanet
MedgenPCID2
Genetic Testing Registry PCID2
NextProtQ5JVF3 [Medical]
TSGene55795
GENETestsPCID2
Target ValidationPCID2
Huge Navigator PCID2 [HugePedia]
snp3D : Map Gene to Disease55795
BioCentury BCIQPCID2
ClinGenPCID2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55795
Chemical/Pharm GKB GenePA144596397
Clinical trialPCID2
Miscellaneous
canSAR (ICR)PCID2 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCID2
EVEXPCID2
GoPubMedPCID2
iHOPPCID2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:35:51 CEST 2017

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