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PCIF1 (PDX1 C-terminal inhibiting factor 1)

Identity

Alias_namesC20orf67
chromosome 20 open reading frame 67
Alias_symbol (synonym)bA465L10.1
PPP1R121
Other alias
HGNC (Hugo) PCIF1
LocusID (NCBI) 63935
Atlas_Id 71761
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45934678 and ends at 45948023 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PCIF1 (20q13.12) / AMPD2 (1p13.3)PCIF1 (20q13.12) / LMNB1 (5q23.2)PCIF1 (20q13.12) / NEAT1 (11q13.1)
PCIF1 (20q13.12) / NMRK1 (9q21.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCIF1   16200
Cards
Entrez_Gene (NCBI)PCIF1  63935  PDX1 C-terminal inhibiting factor 1
AliasesC20orf67; PPP1R121
GeneCards (Weizmann)PCIF1
Ensembl hg19 (Hinxton)ENSG00000100982 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100982 [Gene_View]  chr20:45934678-45948023 [Contig_View]  PCIF1 [Vega]
ICGC DataPortalENSG00000100982
TCGA cBioPortalPCIF1
AceView (NCBI)PCIF1
Genatlas (Paris)PCIF1
WikiGenes63935
SOURCE (Princeton)PCIF1
Genetics Home Reference (NIH)PCIF1
Genomic and cartography
GoldenPath hg38 (UCSC)PCIF1  -     chr20:45934678-45948023 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCIF1  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblPCIF1 - 20q13.12 [CytoView hg19]  PCIF1 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIPCIF1 [Mapview hg19]  PCIF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB050014 AK056553 AK299435 AL137473 BC010005
RefSeq transcript (Entrez)NM_022104
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCIF1
Cluster EST : UnigeneHs.472856 [ NCBI ]
CGAP (NCI)Hs.472856
Alternative Splicing GalleryENSG00000100982
Gene ExpressionPCIF1 [ NCBI-GEO ]   PCIF1 [ EBI - ARRAY_EXPRESS ]   PCIF1 [ SEEK ]   PCIF1 [ MEM ]
Gene Expression Viewer (FireBrowse)PCIF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63935
GTEX Portal (Tissue expression)PCIF1
Human Protein AtlasENSG00000100982-PCIF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4Z3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4Z3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4Z3
Splice isoforms : SwissVarQ9H4Z3
PhosPhoSitePlusQ9H4Z3
Domaine pattern : Prosite (Expaxy)WW_DOMAIN_2 (PS50020)   
Domains : Interpro (EBI)HSP70_C    PCIF1_WW    WW_dom   
Domain families : Pfam (Sanger)PCIF1_WW (PF12237)    WW (PF00397)   
Domain families : Pfam (NCBI)pfam12237    pfam00397   
Domain families : Smart (EMBL)WW (SM00456)  
Conserved Domain (NCBI)PCIF1
DMDM Disease mutations63935
Blocks (Seattle)PCIF1
PDB (SRS)2JX8   
PDB (PDBSum)2JX8   
PDB (IMB)2JX8   
PDB (RSDB)2JX8   
Structural Biology KnowledgeBase2JX8   
SCOP (Structural Classification of Proteins)2JX8   
CATH (Classification of proteins structures)2JX8   
SuperfamilyQ9H4Z3
Human Protein Atlas [tissue]ENSG00000100982-PCIF1 [tissue]
Peptide AtlasQ9H4Z3
HPRD12779
IPIIPI00942711   IPI00014865   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4Z3
IntAct (EBI)Q9H4Z3
FunCoupENSG00000100982
BioGRIDPCIF1
STRING (EMBL)PCIF1
ZODIACPCIF1
Ontologies - Pathways
QuickGOQ9H4Z3
Ontology : AmiGOnucleoplasm  negative regulation of phosphatase activity  microtubule cytoskeleton  intercellular bridge  
Ontology : EGO-EBInucleoplasm  negative regulation of phosphatase activity  microtubule cytoskeleton  intercellular bridge  
NDEx NetworkPCIF1
Atlas of Cancer Signalling NetworkPCIF1
Wikipedia pathwaysPCIF1
Orthology - Evolution
OrthoDB63935
GeneTree (enSembl)ENSG00000100982
Phylogenetic Trees/Animal Genes : TreeFamPCIF1
HOVERGENQ9H4Z3
HOGENOMQ9H4Z3
Homologs : HomoloGenePCIF1
Homology/Alignments : Family Browser (UCSC)PCIF1
Gene fusions - Rearrangements
Tumor Fusion PortalPCIF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCIF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCIF1
dbVarPCIF1
ClinVarPCIF1
1000_GenomesPCIF1 
Exome Variant ServerPCIF1
ExAC (Exome Aggregation Consortium)ENSG00000100982
GNOMAD BrowserENSG00000100982
Genetic variants : HAPMAP63935
Genomic Variants (DGV)PCIF1 [DGVbeta]
DECIPHERPCIF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCIF1 
Mutations
ICGC Data PortalPCIF1 
TCGA Data PortalPCIF1 
Broad Tumor PortalPCIF1
OASIS PortalPCIF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCIF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCIF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCIF1
DgiDB (Drug Gene Interaction Database)PCIF1
DoCM (Curated mutations)PCIF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCIF1 (select a term)
intoGenPCIF1
Cancer3DPCIF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPCIF1
MedgenPCIF1
Genetic Testing Registry PCIF1
NextProtQ9H4Z3 [Medical]
TSGene63935
GENETestsPCIF1
Target ValidationPCIF1
Huge Navigator PCIF1 [HugePedia]
snp3D : Map Gene to Disease63935
BioCentury BCIQPCIF1
ClinGenPCIF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63935
Chemical/Pharm GKB GenePA162398977
Clinical trialPCIF1
Miscellaneous
canSAR (ICR)PCIF1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCIF1
EVEXPCIF1
GoPubMedPCIF1
iHOPPCIF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:42:05 CET 2017

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