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PCMTD2 (protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2)

Identity

Alias_namesC20orf36
chromosome 20 open reading frame 36
Alias_symbol (synonym)FLJ10883
Other alias
HGNC (Hugo) PCMTD2
LocusID (NCBI) 55251
Atlas_Id 71765
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 64255695 and ends at 64276226 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCMTD2 (20q13.33) / DNAJC5 (20q13.33)PCMTD2 (20q13.33) / PRPF6 (20q13.33)PCMTD2 (20q13.33) / SNX6 (14q13.1)
PCMTD2 DNAJC5PCMTD2 SNX6

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCMTD2   15882
Cards
Entrez_Gene (NCBI)PCMTD2  55251  protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2
AliasesC20orf36
GeneCards (Weizmann)PCMTD2
Ensembl hg19 (Hinxton)ENSG00000203880 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203880 [Gene_View]  chr20:64255695-64276226 [Contig_View]  PCMTD2 [Vega]
ICGC DataPortalENSG00000203880
TCGA cBioPortalPCMTD2
AceView (NCBI)PCMTD2
Genatlas (Paris)PCMTD2
WikiGenes55251
SOURCE (Princeton)PCMTD2
Genetics Home Reference (NIH)PCMTD2
Genomic and cartography
GoldenPath hg38 (UCSC)PCMTD2  -     chr20:64255695-64276226 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCMTD2  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblPCMTD2 - 20q13.33 [CytoView hg19]  PCMTD2 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIPCMTD2 [Mapview hg19]  PCMTD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001745 AK074436 AK126700 BC032332 BC033665
RefSeq transcript (Entrez)NM_001104925 NM_018257
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_187624
Consensus coding sequences : CCDS (NCBI)PCMTD2
Cluster EST : UnigeneHs.744845 [ NCBI ]
CGAP (NCI)Hs.744845
Alternative Splicing GalleryENSG00000203880
Gene ExpressionPCMTD2 [ NCBI-GEO ]   PCMTD2 [ EBI - ARRAY_EXPRESS ]   PCMTD2 [ SEEK ]   PCMTD2 [ MEM ]
Gene Expression Viewer (FireBrowse)PCMTD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55251
GTEX Portal (Tissue expression)PCMTD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NV79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NV79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NV79
Splice isoforms : SwissVarQ9NV79
PhosPhoSitePlusQ9NV79
Domains : Interpro (EBI)PCMT    SAM-dependent_MTases   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCMTD2
DMDM Disease mutations55251
Blocks (Seattle)PCMTD2
SuperfamilyQ9NV79
Human Protein AtlasENSG00000203880
Peptide AtlasQ9NV79
HPRD12764
IPIIPI00884185   IPI00217155   IPI00374720   IPI00940078   
Protein Interaction databases
DIP (DOE-UCLA)Q9NV79
IntAct (EBI)Q9NV79
FunCoupENSG00000203880
BioGRIDPCMTD2
STRING (EMBL)PCMTD2
ZODIACPCMTD2
Ontologies - Pathways
QuickGOQ9NV79
Ontology : AmiGOprotein-L-isoaspartate (D-aspartate) O-methyltransferase activity  cytoplasm  protein methylation  
Ontology : EGO-EBIprotein-L-isoaspartate (D-aspartate) O-methyltransferase activity  cytoplasm  protein methylation  
NDEx NetworkPCMTD2
Atlas of Cancer Signalling NetworkPCMTD2
Wikipedia pathwaysPCMTD2
Orthology - Evolution
OrthoDB55251
GeneTree (enSembl)ENSG00000203880
Phylogenetic Trees/Animal Genes : TreeFamPCMTD2
HOVERGENQ9NV79
HOGENOMQ9NV79
Homologs : HomoloGenePCMTD2
Homology/Alignments : Family Browser (UCSC)PCMTD2
Gene fusions - Rearrangements
Fusion: TCGAPCMTD2 DNAJC5
Fusion: TCGAPCMTD2 SNX6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCMTD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCMTD2
dbVarPCMTD2
ClinVarPCMTD2
1000_GenomesPCMTD2 
Exome Variant ServerPCMTD2
ExAC (Exome Aggregation Consortium)PCMTD2 (select the gene name)
Genetic variants : HAPMAP55251
Genomic Variants (DGV)PCMTD2 [DGVbeta]
DECIPHERPCMTD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCMTD2 
Mutations
ICGC Data PortalPCMTD2 
TCGA Data PortalPCMTD2 
Broad Tumor PortalPCMTD2
OASIS PortalPCMTD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCMTD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCMTD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCMTD2
DgiDB (Drug Gene Interaction Database)PCMTD2
DoCM (Curated mutations)PCMTD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCMTD2 (select a term)
intoGenPCMTD2
Cancer3DPCMTD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPCMTD2
Genetic Testing Registry PCMTD2
NextProtQ9NV79 [Medical]
TSGene55251
GENETestsPCMTD2
Target ValidationPCMTD2
Huge Navigator PCMTD2 [HugePedia]
snp3D : Map Gene to Disease55251
BioCentury BCIQPCMTD2
ClinGenPCMTD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55251
Chemical/Pharm GKB GenePA25750
Clinical trialPCMTD2
Miscellaneous
canSAR (ICR)PCMTD2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCMTD2
EVEXPCMTD2
GoPubMedPCMTD2
iHOPPCMTD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:11 CEST 2017

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