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PCMTD2 (protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2)

Identity

Alias (NCBI)C20orf36
HGNC (Hugo) PCMTD2
HGNC Alias symbFLJ10883
HGNC Previous nameC20orf36
HGNC Previous namechromosome 20 open reading frame 36
LocusID (NCBI) 55251
Atlas_Id 71765
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 64255748 and ends at 64276226 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PCMTD2 (20q13.33) / DNAJC5 (20q13.33)PCMTD2 (20q13.33) / PRPF6 (20q13.33)PCMTD2 (20q13.33) / SNX6 (14q13.1)
PCMTD2 DNAJC5PCMTD2 SNX6

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PCMTD2   15882
Cards
Entrez_Gene (NCBI)PCMTD2    protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2
AliasesC20orf36
GeneCards (Weizmann)PCMTD2
Ensembl hg19 (Hinxton)ENSG00000203880 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203880 [Gene_View]  ENSG00000203880 [Sequence]  chr20:64255748-64276226 [Contig_View]  PCMTD2 [Vega]
ICGC DataPortalENSG00000203880
TCGA cBioPortalPCMTD2
AceView (NCBI)PCMTD2
Genatlas (Paris)PCMTD2
SOURCE (Princeton)PCMTD2
Genetics Home Reference (NIH)PCMTD2
Genomic and cartography
GoldenPath hg38 (UCSC)PCMTD2  -     chr20:64255748-64276226 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCMTD2  -     20q13.33   [Description]    (hg19-Feb_2009)
GoldenPathPCMTD2 - 20q13.33 [CytoView hg19]  PCMTD2 - 20q13.33 [CytoView hg38]
ImmunoBaseENSG00000203880
Genome Data Viewer NCBIPCMTD2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK001745 AK074436 AK126700 BC032332 BC033665
RefSeq transcript (Entrez)NM_001104925 NM_018257
Consensus coding sequences : CCDS (NCBI)PCMTD2
Gene ExpressionPCMTD2 [ NCBI-GEO ]   PCMTD2 [ EBI - ARRAY_EXPRESS ]   PCMTD2 [ SEEK ]   PCMTD2 [ MEM ]
Gene Expression Viewer (FireBrowse)PCMTD2 [ Firebrowse - Broad ]
GenevisibleExpression of PCMTD2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55251
GTEX Portal (Tissue expression)PCMTD2
Human Protein AtlasENSG00000203880-PCMTD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NV79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NV79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NV79
PhosPhoSitePlusQ9NV79
Domains : Interpro (EBI)PCMT    SAM-dependent_MTases   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCMTD2
SuperfamilyQ9NV79
AlphaFold pdb e-kbQ9NV79   
Human Protein Atlas [tissue]ENSG00000203880-PCMTD2 [tissue]
HPRD12764
Protein Interaction databases
DIP (DOE-UCLA)Q9NV79
IntAct (EBI)Q9NV79
BioGRIDPCMTD2
STRING (EMBL)PCMTD2
ZODIACPCMTD2
Ontologies - Pathways
QuickGOQ9NV79
Ontology : AmiGOprotein-L-isoaspartate (D-aspartate) O-methyltransferase activity  protein binding  cytoplasm  protein methylation  
Ontology : EGO-EBIprotein-L-isoaspartate (D-aspartate) O-methyltransferase activity  protein binding  cytoplasm  protein methylation  
NDEx NetworkPCMTD2
Atlas of Cancer Signalling NetworkPCMTD2
Wikipedia pathwaysPCMTD2
Orthology - Evolution
OrthoDB55251
GeneTree (enSembl)ENSG00000203880
Phylogenetic Trees/Animal Genes : TreeFamPCMTD2
Homologs : HomoloGenePCMTD2
Homology/Alignments : Family Browser (UCSC)PCMTD2
Gene fusions - Rearrangements
Fusion : QuiverPCMTD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCMTD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCMTD2
dbVarPCMTD2
ClinVarPCMTD2
MonarchPCMTD2
1000_GenomesPCMTD2 
Exome Variant ServerPCMTD2
GNOMAD BrowserENSG00000203880
Varsome BrowserPCMTD2
ACMGPCMTD2 variants
VarityQ9NV79
Genomic Variants (DGV)PCMTD2 [DGVbeta]
DECIPHERPCMTD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCMTD2 
Mutations
ICGC Data PortalPCMTD2 
TCGA Data PortalPCMTD2 
Broad Tumor PortalPCMTD2
OASIS PortalPCMTD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCMTD2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPCMTD2
Mutations and Diseases : HGMDPCMTD2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPCMTD2
DgiDB (Drug Gene Interaction Database)PCMTD2
DoCM (Curated mutations)PCMTD2
CIViC (Clinical Interpretations of Variants in Cancer)PCMTD2
Cancer3DPCMTD2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPCMTD2
MedgenPCMTD2
Genetic Testing Registry PCMTD2
NextProtQ9NV79 [Medical]
GENETestsPCMTD2
Target ValidationPCMTD2
Huge Navigator PCMTD2 [HugePedia]
ClinGenPCMTD2
Clinical trials, drugs, therapy
MyCancerGenomePCMTD2
Protein Interactions : CTDPCMTD2
Pharm GKB GenePA25750
PharosQ9NV79
Clinical trialPCMTD2
Miscellaneous
canSAR (ICR)PCMTD2
HarmonizomePCMTD2
DataMed IndexPCMTD2
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPCMTD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:15:43 CEST 2021

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