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PCNP (PEST proteolytic signal containing nuclear protein)

Identity

Other alias-
HGNC (Hugo) PCNP
LocusID (NCBI) 57092
Atlas_Id 71768
Location 3q12.3  [Link to chromosome band 3q12]
Location_base_pair Starts at 101293042 and ends at 101313281 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NUP188 (9q34.11) / PCNP (3q12.3)PCNP (3q12.3) / CKB (14q32.32)PCNP (3q12.3) / MKRN2 (3p25.2)
PCNP (3q12.3) / OIP5 (15q15.1)PCNP (3q12.3) / OSBPL3 (7p15.3)PCNP (3q12.3) / PCCA (13q32.3)
PCNP (3q12.3) / TFG (3q12.2)PITX1 (5q31.1) / PCNP (3q12.3)SCAND1 (20q11.23) / PCNP (3q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCNP   30023
Cards
Entrez_Gene (NCBI)PCNP  57092  PEST proteolytic signal containing nuclear protein
Aliases
GeneCards (Weizmann)PCNP
Ensembl hg19 (Hinxton)ENSG00000081154 [Gene_View]  chr3:101293042-101313281 [Contig_View]  PCNP [Vega]
Ensembl hg38 (Hinxton)ENSG00000081154 [Gene_View]  chr3:101293042-101313281 [Contig_View]  PCNP [Vega]
ICGC DataPortalENSG00000081154
TCGA cBioPortalPCNP
AceView (NCBI)PCNP
Genatlas (Paris)PCNP
WikiGenes57092
SOURCE (Princeton)PCNP
Genetics Home Reference (NIH)PCNP
Genomic and cartography
GoldenPath hg19 (UCSC)PCNP  -     chr3:101293042-101313281 +  3q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCNP  -     3q12.3   [Description]    (hg38-Dec_2013)
EnsemblPCNP - 3q12.3 [CytoView hg19]  PCNP - 3q12.3 [CytoView hg38]
Mapping of homologs : NCBIPCNP [Mapview hg19]  PCNP [Mapview hg38]
OMIM615210   
Gene and transcription
Genbank (Entrez)AB037675 AK025551 AK098760 AK222978 AK314629
RefSeq transcript (Entrez)NM_020357
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)PCNP
Cluster EST : UnigeneHs.744968 [ NCBI ]
CGAP (NCI)Hs.744968
Alternative Splicing GalleryENSG00000081154
Gene ExpressionPCNP [ NCBI-GEO ]   PCNP [ EBI - ARRAY_EXPRESS ]   PCNP [ SEEK ]   PCNP [ MEM ]
Gene Expression Viewer (FireBrowse)PCNP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57092
GTEX Portal (Tissue expression)PCNP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WW12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WW12
Splice isoforms : SwissVarQ8WW12
PhosPhoSitePlusQ8WW12
Domains : Interpro (EBI)PCNP   
Domain families : Pfam (Sanger)PCNP (PF15473)   
Domain families : Pfam (NCBI)pfam15473   
Conserved Domain (NCBI)PCNP
DMDM Disease mutations57092
Blocks (Seattle)PCNP
SuperfamilyQ8WW12
Human Protein AtlasENSG00000081154
Peptide AtlasQ8WW12
HPRD17826
IPIIPI00060650   IPI00604582   IPI00790305   IPI00798388   IPI00980276   
Protein Interaction databases
DIP (DOE-UCLA)Q8WW12
IntAct (EBI)Q8WW12
FunCoupENSG00000081154
BioGRIDPCNP
STRING (EMBL)PCNP
ZODIACPCNP
Ontologies - Pathways
QuickGOQ8WW12
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  cell cycle  protein ubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  cell cycle  protein ubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  
NDEx NetworkPCNP
Atlas of Cancer Signalling NetworkPCNP
Wikipedia pathwaysPCNP
Orthology - Evolution
OrthoDB57092
GeneTree (enSembl)ENSG00000081154
Phylogenetic Trees/Animal Genes : TreeFamPCNP
HOVERGENQ8WW12
HOGENOMQ8WW12
Homologs : HomoloGenePCNP
Homology/Alignments : Family Browser (UCSC)PCNP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCNP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCNP
dbVarPCNP
ClinVarPCNP
1000_GenomesPCNP 
Exome Variant ServerPCNP
ExAC (Exome Aggregation Consortium)PCNP (select the gene name)
Genetic variants : HAPMAP57092
Genomic Variants (DGV)PCNP [DGVbeta]
DECIPHER (Syndromes)3:101293042-101313281  ENSG00000081154
CONAN: Copy Number AnalysisPCNP 
Mutations
ICGC Data PortalPCNP 
TCGA Data PortalPCNP 
Broad Tumor PortalPCNP
OASIS PortalPCNP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCNP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCNP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCNP
DgiDB (Drug Gene Interaction Database)PCNP
DoCM (Curated mutations)PCNP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCNP (select a term)
intoGenPCNP
Cancer3DPCNP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615210   
Orphanet
MedgenPCNP
Genetic Testing Registry PCNP
NextProtQ8WW12 [Medical]
TSGene57092
GENETestsPCNP
Huge Navigator PCNP [HugePedia]
snp3D : Map Gene to Disease57092
BioCentury BCIQPCNP
ClinGenPCNP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57092
Chemical/Pharm GKB GenePA143485572
Clinical trialPCNP
Miscellaneous
canSAR (ICR)PCNP (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCNP
EVEXPCNP
GoPubMedPCNP
iHOPPCNP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:09 CET 2017

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