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PCNP (PEST proteolytic signal containing nuclear protein)

Identity

Alias (NCBI)-
HGNC (Hugo) PCNP
LocusID (NCBI) 57092
Atlas_Id 57806
Location 3q12.3  [Link to chromosome band 3q12]
Location_base_pair Starts at 101574180 and ends at 101594465 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NUP188 (9q34.11) / PCNP (3q12.3)PCNP (3q12.3) / CKB (14q32.32)PCNP (3q12.3) / MKRN2 (3p25.2)
PCNP (3q12.3) / OIP5 (15q15.1)PCNP (3q12.3) / OSBPL3 (7p15.3)PCNP (3q12.3) / PCCA (13q32.3)
PCNP (3q12.3) / TFG (3q12.2)PITX1 (5q31.1) / PCNP (3q12.3)SCAND1 (20q11.23) / PCNP (3q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PCNP   30023
Cards
Entrez_Gene (NCBI)PCNP    PEST proteolytic signal containing nuclear protein
Aliases
GeneCards (Weizmann)PCNP
Ensembl hg19 (Hinxton)ENSG00000081154 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000081154 [Gene_View]  ENSG00000081154 [Sequence]  chr3:101574180-101594465 [Contig_View]  PCNP [Vega]
ICGC DataPortalENSG00000081154
TCGA cBioPortalPCNP
AceView (NCBI)PCNP
Genatlas (Paris)PCNP
SOURCE (Princeton)PCNP
Genetics Home Reference (NIH)PCNP
Genomic and cartography
GoldenPath hg38 (UCSC)PCNP  -     chr3:101574180-101594465 +  3q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCNP  -     3q12.3   [Description]    (hg19-Feb_2009)
GoldenPathPCNP - 3q12.3 [CytoView hg19]  PCNP - 3q12.3 [CytoView hg38]
ImmunoBaseENSG00000081154
Genome Data Viewer NCBIPCNP [Mapview hg19]  
OMIM615210   
Gene and transcription
Genbank (Entrez)AB037675 AK025551 AK098760 AK222978 AK314629
RefSeq transcript (Entrez)NM_001320395 NM_001320397 NM_001320398 NM_001320399 NM_001320400 NM_001320401 NM_020357
Consensus coding sequences : CCDS (NCBI)PCNP
Gene ExpressionPCNP [ NCBI-GEO ]   PCNP [ EBI - ARRAY_EXPRESS ]   PCNP [ SEEK ]   PCNP [ MEM ]
Gene Expression Viewer (FireBrowse)PCNP [ Firebrowse - Broad ]
GenevisibleExpression of PCNP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57092
GTEX Portal (Tissue expression)PCNP
Human Protein AtlasENSG00000081154-PCNP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WW12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WW12
PhosPhoSitePlusQ8WW12
Domains : Interpro (EBI)PCNP   
Domain families : Pfam (Sanger)PCNP (PF15473)   
Domain families : Pfam (NCBI)pfam15473   
Conserved Domain (NCBI)PCNP
SuperfamilyQ8WW12
AlphaFold pdb e-kbQ8WW12   
Human Protein Atlas [tissue]ENSG00000081154-PCNP [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8WW12
IntAct (EBI)Q8WW12
BioGRIDPCNP
STRING (EMBL)PCNP
ZODIACPCNP
Ontologies - Pathways
QuickGOQ8WW12
Ontology : AmiGOprotein binding  nucleus  nucleus  nucleoplasm  cell cycle  protein ubiquitination  protein ubiquitination  nuclear body  proteasome-mediated ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIprotein binding  nucleus  nucleus  nucleoplasm  cell cycle  protein ubiquitination  protein ubiquitination  nuclear body  proteasome-mediated ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  
NDEx NetworkPCNP
Atlas of Cancer Signalling NetworkPCNP
Wikipedia pathwaysPCNP
Orthology - Evolution
OrthoDB57092
GeneTree (enSembl)ENSG00000081154
Phylogenetic Trees/Animal Genes : TreeFamPCNP
Homologs : HomoloGenePCNP
Homology/Alignments : Family Browser (UCSC)PCNP
Gene fusions - Rearrangements
Fusion : QuiverPCNP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCNP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCNP
dbVarPCNP
ClinVarPCNP
MonarchPCNP
1000_GenomesPCNP 
Exome Variant ServerPCNP
GNOMAD BrowserENSG00000081154
Varsome BrowserPCNP
ACMGPCNP variants
VarityQ8WW12
Genomic Variants (DGV)PCNP [DGVbeta]
DECIPHERPCNP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCNP 
Mutations
ICGC Data PortalPCNP 
TCGA Data PortalPCNP 
Broad Tumor PortalPCNP
OASIS PortalPCNP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCNP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPCNP
Mutations and Diseases : HGMDPCNP
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPCNP
DgiDB (Drug Gene Interaction Database)PCNP
DoCM (Curated mutations)PCNP
CIViC (Clinical Interpretations of Variants in Cancer)PCNP
Cancer3DPCNP
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615210   
Orphanet
DisGeNETPCNP
MedgenPCNP
Genetic Testing Registry PCNP
NextProtQ8WW12 [Medical]
GENETestsPCNP
Target ValidationPCNP
Huge Navigator PCNP [HugePedia]
ClinGenPCNP
Clinical trials, drugs, therapy
MyCancerGenomePCNP
Protein Interactions : CTDPCNP
Pharm GKB GenePA143485572
PharosQ8WW12
Clinical trialPCNP
Miscellaneous
canSAR (ICR)PCNP
HarmonizomePCNP
DataMed IndexPCNP
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPCNP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:24:37 CEST 2021

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