Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCNT (pericentrin)

Identity

Other namesKEN
MOPD2
PCN
PCNT2
PCNTB
PCTN2
SCKL4
HGNC (Hugo) PCNT
LocusID (NCBI) 5116
Location 21q22.3
Location_base_pair Starts at 47744036 and ends at 47865682 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PCNT   16068
Cards
Entrez_Gene (NCBI)PCNT  5116  pericentrin
GeneCards (Weizmann)PCNT
Ensembl (Hinxton)ENSG00000160299 [Gene_View]  chr21:47744036-47865682 [Contig_View]  PCNT [Vega]
ICGC DataPortalENSG00000160299
AceView (NCBI)PCNT
Genatlas (Paris)PCNT
WikiGenes5116
SOURCE (Princeton)NM_006031
Genomic and cartography
GoldenPath (UCSC)PCNT  -  21q22.3   chr21:47744036-47865682 +  21q22.3   [Description]    (hg19-Feb_2009)
EnsemblPCNT - 21q22.3 [CytoView]
Mapping of homologs : NCBIPCNT [Mapview]
OMIM210720   605925   
Gene and transcription
Genbank (Entrez)AB007862 AF515282 AK024009 AK093923 AK296731
RefSeq transcript (Entrez)NM_006031
RefSeq genomic (Entrez)AC_000153 NC_000021 NC_018932 NG_008961 NT_011512 NW_001838717 NW_004929427
Consensus coding sequences : CCDS (NCBI)PCNT
Cluster EST : UnigeneHs.474069 [ NCBI ]
CGAP (NCI)Hs.474069
Alternative Splicing : Fast-db (Paris)GSHG0019570
Alternative Splicing GalleryENSG00000160299
Gene ExpressionPCNT [ NCBI-GEO ]     PCNT [ SEEK ]   PCNT [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95613 (Uniprot)
NextProtO95613  [Medical]
With graphics : InterProO95613
Splice isoforms : SwissVarO95613 (Swissvar)
Domains : Interpro (EBI)PACT_domain    Pericentrin   
Related proteins : CluSTrO95613
Domain families : Pfam (Sanger)PACT_coil_coil (PF10495)   
Domain families : Pfam (NCBI)pfam10495   
DMDM Disease mutations5116
Blocks (Seattle)O95613
Human Protein AtlasENSG00000160299
Peptide AtlasO95613
HPRD05804
IPIIPI00479143   IPI00973279   IPI00794771   IPI00220259   IPI00795262   
Protein Interaction databases
DIP (DOE-UCLA)O95613
IntAct (EBI)O95613
FunCoupENSG00000160299
BioGRIDPCNT
IntegromeDBPCNT
STRING (EMBL)PCNT
Ontologies - Pathways
QuickGOO95613
Ontology : AmiGOG2/M transition of mitotic cell cycle  microtubule cytoskeleton organization  mitotic cell cycle  in utero embryonic development  neuron migration  protein binding  calmodulin binding  cytoplasm  centrosome  centriole  cytosol  microtubule  spindle organization  membrane  cerebellar cortex morphogenesis  olfactory bulb development  centriolar satellite  limb morphogenesis  multicellular organism growth  cilium assembly  negative regulation of apoptotic process  intercellular bridge  brain morphogenesis  neural precursor cell proliferation  positive regulation of intracellular protein transport  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  microtubule cytoskeleton organization  mitotic cell cycle  in utero embryonic development  neuron migration  protein binding  calmodulin binding  cytoplasm  centrosome  centriole  cytosol  microtubule  spindle organization  membrane  cerebellar cortex morphogenesis  olfactory bulb development  centriolar satellite  limb morphogenesis  multicellular organism growth  cilium assembly  negative regulation of apoptotic process  intercellular bridge  brain morphogenesis  neural precursor cell proliferation  positive regulation of intracellular protein transport  
Pathways : BIOCARTAProtein Kinase A at the Centrosome [Genes]   
Protein Interaction DatabasePCNT
Wikipedia pathwaysPCNT
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PCNT
SNP (GeneSNP Utah)PCNT
SNP : HGBasePCNT
Genetic variants : HAPMAPPCNT
1000_GenomesPCNT 
ICGC programENSG00000160299 
CONAN: Copy Number AnalysisPCNT 
Somatic Mutations in Cancer : COSMICPCNT 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
DECIPHER (Syndromes)21:47744036-47865682
Mutations and Diseases : HGMDPCNT
OMIM210720    605925   
MedgenPCNT
GENETestsPCNT
Disease Genetic AssociationPCNT
Huge Navigator PCNT [HugePedia]  PCNT [HugeCancerGEM]
Genomic VariantsPCNT  PCNT [DGVbeta]
Exome VariantPCNT
dbVarPCNT
ClinVarPCNT
snp3D : Map Gene to Disease5116
General knowledge
Homologs : HomoloGenePCNT
Homology/Alignments : Family Browser (UCSC)PCNT
Phylogenetic Trees/Animal Genes : TreeFamPCNT
Chemical/Protein Interactions : CTD5116
Chemical/Pharm GKB GenePA33079
Clinical trialPCNT
Cancer Resource (Charite)ENSG00000160299
Other databases
Probes
Litterature
PubMed64 Pubmed reference(s) in Entrez
CoreMinePCNT
GoPubMedPCNT
iHOPPCNT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:47:31 CET 2014

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