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PCNX1 (pecanex homolog 1 (Drosophila))

Identity

Alias_namesPCNXL1
PCNX
pecanex-like 1 (Drosophila)
pecanex homolog (Drosophila)
Alias_symbol (synonym)KIAA0995
KIAA0805
pecanex
Other alias
HGNC (Hugo) PCNX1
LocusID (NCBI) 22990
Atlas_Id 78085
Location 14q24.2  [Link to chromosome band 14q24]
Location_base_pair Starts at 70907405 and ends at 71115382 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATXN1 (6p22.3) / PCNX1 (14q24.2)PCNX1 (14q24.2) / FANCD2 (3p25.3)PCNX1 (14q24.2) / PCNX1 (14q24.2)
PCNX1 (14q24.2) / RAD51B (14q24.1)SPARC (5q33.1) / PCNX1 (14q24.2)SRSF1 (17q22) / PCNX1 (14q24.2)
STK39 (2q24.3) / PCNX1 (14q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCNX1   19740
Cards
Entrez_Gene (NCBI)PCNX1  22990  pecanex homolog 1 (Drosophila)
AliasesPCNX; PCNXL1; pecanex
GeneCards (Weizmann)PCNX1
Ensembl hg19 (Hinxton)ENSG00000100731 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100731 [Gene_View]  chr14:70907405-71115382 [Contig_View]  PCNX1 [Vega]
ICGC DataPortalENSG00000100731
TCGA cBioPortalPCNX1
AceView (NCBI)PCNX1
Genatlas (Paris)PCNX1
WikiGenes22990
SOURCE (Princeton)PCNX1
Genetics Home Reference (NIH)PCNX1
Genomic and cartography
GoldenPath hg38 (UCSC)PCNX1  -     chr14:70907405-71115382 +  14q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCNX1  -     14q24.2   [Description]    (hg19-Feb_2009)
EnsemblPCNX1 - 14q24.2 [CytoView hg19]  PCNX1 - 14q24.2 [CytoView hg38]
Mapping of homologs : NCBIPCNX1 [Mapview hg19]  PCNX1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB018348 AB023212 AF233450 AK027062 AK127570
RefSeq transcript (Entrez)NM_001308160 NM_014982
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCNX1
Cluster EST : UnigeneHs.446559 [ NCBI ]
CGAP (NCI)Hs.446559
Alternative Splicing GalleryENSG00000100731
Gene ExpressionPCNX1 [ NCBI-GEO ]   PCNX1 [ EBI - ARRAY_EXPRESS ]   PCNX1 [ SEEK ]   PCNX1 [ MEM ]
Gene Expression Viewer (FireBrowse)PCNX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22990
GTEX Portal (Tissue expression)PCNX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RV3
Splice isoforms : SwissVarQ96RV3
PhosPhoSitePlusQ96RV3
Domains : Interpro (EBI)Pecanex   
Domain families : Pfam (Sanger)Pecanex_C (PF05041)   
Domain families : Pfam (NCBI)pfam05041   
Conserved Domain (NCBI)PCNX1
DMDM Disease mutations22990
Blocks (Seattle)PCNX1
SuperfamilyQ96RV3
Human Protein AtlasENSG00000100731
Peptide AtlasQ96RV3
HPRD10139
IPIIPI00102678   IPI00375255   IPI00375256   IPI01013985   IPI01025081   IPI01025421   IPI01024700   
Protein Interaction databases
DIP (DOE-UCLA)Q96RV3
IntAct (EBI)Q96RV3
FunCoupENSG00000100731
BioGRIDPCNX1
STRING (EMBL)PCNX1
ZODIACPCNX1
Ontologies - Pathways
QuickGOQ96RV3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkPCNX1
Atlas of Cancer Signalling NetworkPCNX1
Wikipedia pathwaysPCNX1
Orthology - Evolution
OrthoDB22990
GeneTree (enSembl)ENSG00000100731
Phylogenetic Trees/Animal Genes : TreeFamPCNX1
HOVERGENQ96RV3
HOGENOMQ96RV3
Homologs : HomoloGenePCNX1
Homology/Alignments : Family Browser (UCSC)PCNX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCNX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCNX1
dbVarPCNX1
ClinVarPCNX1
1000_GenomesPCNX1 
Exome Variant ServerPCNX1
ExAC (Exome Aggregation Consortium)PCNX1 (select the gene name)
Genetic variants : HAPMAP22990
Genomic Variants (DGV)PCNX1 [DGVbeta]
DECIPHERPCNX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCNX1 
Mutations
ICGC Data PortalPCNX1 
TCGA Data PortalPCNX1 
Broad Tumor PortalPCNX1
OASIS PortalPCNX1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPCNX1
BioMutasearch PCNX1
DgiDB (Drug Gene Interaction Database)PCNX1
DoCM (Curated mutations)PCNX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCNX1 (select a term)
intoGenPCNX1
Cancer3DPCNX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPCNX1
Genetic Testing Registry PCNX1
NextProtQ96RV3 [Medical]
TSGene22990
GENETestsPCNX1
Target ValidationPCNX1
Huge Navigator PCNX1 [HugePedia]
snp3D : Map Gene to Disease22990
BioCentury BCIQPCNX1
ClinGenPCNX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22990
Chemical/Pharm GKB GenePA134905848
Clinical trialPCNX1
Miscellaneous
canSAR (ICR)PCNX1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCNX1
EVEXPCNX1
GoPubMedPCNX1
iHOPPCNX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:53 CEST 2017

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