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PCNX2 (pecanex homolog 2 (Drosophila))

Identity

Alias_namesPCNXL2
pecanex-like 2 (Drosophila)
Alias_symbol (synonym)KIAA0435
FLJ11383
Other alias
HGNC (Hugo) PCNX2
LocusID (NCBI) 80003
Atlas_Id 55597
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 233294014 and ends at 233295713 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCNX2 (1q42.2) / CDCA7 (2q31.1)PCNX2 (1q42.2) / COG2 (1q42.2)PCNX2 (1q42.2) / PCNX2 (1q42.2)
PCNX2 (1q42.2) / PTPN14 (1q41)PCNX2 (1q42.2) / TAOK3 (12q24.23)RPS6KB1 (17q23.1) / PCNX2 (1q42.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCNX2   8736
Cards
Entrez_Gene (NCBI)PCNX2  80003  pecanex homolog 2 (Drosophila)
AliasesPCNXL2
GeneCards (Weizmann)PCNX2
Ensembl hg19 (Hinxton)ENSG00000135749 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135749 [Gene_View]  chr1:233294014-233295713 [Contig_View]  PCNX2 [Vega]
ICGC DataPortalENSG00000135749
TCGA cBioPortalPCNX2
AceView (NCBI)PCNX2
Genatlas (Paris)PCNX2
WikiGenes80003
SOURCE (Princeton)PCNX2
Genetics Home Reference (NIH)PCNX2
Genomic and cartography
GoldenPath hg38 (UCSC)PCNX2  -     chr1:233294014-233295713 -  1q42.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCNX2  -     1q42.2   [Description]    (hg19-Feb_2009)
EnsemblPCNX2 - 1q42.2 [CytoView hg19]  PCNX2 - 1q42.2 [CytoView hg38]
Mapping of homologs : NCBIPCNX2 [Mapview hg19]  PCNX2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB007895 AK021445 AK055374 AK074078 AK090784
RefSeq transcript (Entrez)NM_001328607 NM_014801 NM_024938
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCNX2
Cluster EST : UnigeneHs.370605 [ NCBI ]
CGAP (NCI)Hs.370605
Alternative Splicing GalleryENSG00000135749
Gene ExpressionPCNX2 [ NCBI-GEO ]   PCNX2 [ EBI - ARRAY_EXPRESS ]   PCNX2 [ SEEK ]   PCNX2 [ MEM ]
Gene Expression Viewer (FireBrowse)PCNX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80003
GTEX Portal (Tissue expression)PCNX2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKB5
Splice isoforms : SwissVarA6NKB5
PhosPhoSitePlusA6NKB5
Domains : Interpro (EBI)Pecanex   
Domain families : Pfam (Sanger)Pecanex_C (PF05041)   
Domain families : Pfam (NCBI)pfam05041   
Conserved Domain (NCBI)PCNX2
DMDM Disease mutations80003
Blocks (Seattle)PCNX2
SuperfamilyA6NKB5
Human Protein AtlasENSG00000135749
Peptide AtlasA6NKB5
HPRD15108
IPIIPI00186853   IPI00015501   IPI00514056   IPI00893561   IPI00981092   IPI00978722   IPI00984755   IPI00981832   IPI00981944   IPI00902808   IPI00982432   IPI00978205   
Protein Interaction databases
DIP (DOE-UCLA)A6NKB5
IntAct (EBI)A6NKB5
FunCoupENSG00000135749
BioGRIDPCNX2
STRING (EMBL)PCNX2
ZODIACPCNX2
Ontologies - Pathways
QuickGOA6NKB5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkPCNX2
Atlas of Cancer Signalling NetworkPCNX2
Wikipedia pathwaysPCNX2
Orthology - Evolution
OrthoDB80003
GeneTree (enSembl)ENSG00000135749
Phylogenetic Trees/Animal Genes : TreeFamPCNX2
HOVERGENA6NKB5
HOGENOMA6NKB5
Homologs : HomoloGenePCNX2
Homology/Alignments : Family Browser (UCSC)PCNX2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCNX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCNX2
dbVarPCNX2
ClinVarPCNX2
1000_GenomesPCNX2 
Exome Variant ServerPCNX2
ExAC (Exome Aggregation Consortium)PCNX2 (select the gene name)
Genetic variants : HAPMAP80003
Genomic Variants (DGV)PCNX2 [DGVbeta]
DECIPHERPCNX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCNX2 
Mutations
ICGC Data PortalPCNX2 
TCGA Data PortalPCNX2 
Broad Tumor PortalPCNX2
OASIS PortalPCNX2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPCNX2
BioMutasearch PCNX2
DgiDB (Drug Gene Interaction Database)PCNX2
DoCM (Curated mutations)PCNX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCNX2 (select a term)
intoGenPCNX2
Cancer3DPCNX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPCNX2
Genetic Testing Registry PCNX2
NextProtA6NKB5 [Medical]
TSGene80003
GENETestsPCNX2
Target ValidationPCNX2
Huge Navigator PCNX2 [HugePedia]
snp3D : Map Gene to Disease80003
BioCentury BCIQPCNX2
ClinGenPCNX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80003
Chemical/Pharm GKB GenePA33081
Clinical trialPCNX2
Miscellaneous
canSAR (ICR)PCNX2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCNX2
EVEXPCNX2
GoPubMedPCNX2
iHOPPCNX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:48:48 CEST 2017

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