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PCNX3 (pecanex homolog 3 (Drosophila))

Identity

Alias_namesPCNXL3
pecanex-like 3 (Drosophila)
Alias_symbol (synonym)FLJ22427
Other alias
HGNC (Hugo) PCNX3
LocusID (NCBI) 399909
Atlas_Id 78096
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65616312 and ends at 65637439 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FURIN (15q26.1) / PCNX3 (11q13.1)PCNX3 (11q13.1) / C11orf80 (11q13.2)PCNX3 (11q13.1) / PPM1G (2p23.3)
PCNX3 (11q13.1) / SF3A1 (22q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCNX3   18760
Cards
Entrez_Gene (NCBI)PCNX3  399909  pecanex homolog 3 (Drosophila)
AliasesPCNXL3
GeneCards (Weizmann)PCNX3
Ensembl hg19 (Hinxton)ENSG00000197136 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197136 [Gene_View]  chr11:65616312-65637439 [Contig_View]  PCNX3 [Vega]
ICGC DataPortalENSG00000197136
TCGA cBioPortalPCNX3
AceView (NCBI)PCNX3
Genatlas (Paris)PCNX3
WikiGenes399909
SOURCE (Princeton)PCNX3
Genetics Home Reference (NIH)PCNX3
Genomic and cartography
GoldenPath hg38 (UCSC)PCNX3  -     chr11:65616312-65637439 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCNX3  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblPCNX3 - 11q13.1 [CytoView hg19]  PCNX3 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIPCNX3 [Mapview hg19]  PCNX3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA426047 AK308625 BE735110 BU616089 BX640978
RefSeq transcript (Entrez)NM_032223
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCNX3
Cluster EST : UnigeneHs.380801 [ NCBI ]
CGAP (NCI)Hs.380801
Alternative Splicing GalleryENSG00000197136
Gene ExpressionPCNX3 [ NCBI-GEO ]   PCNX3 [ EBI - ARRAY_EXPRESS ]   PCNX3 [ SEEK ]   PCNX3 [ MEM ]
Gene Expression Viewer (FireBrowse)PCNX3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399909
GTEX Portal (Tissue expression)PCNX3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6A9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6A9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6A9
Splice isoforms : SwissVarQ9H6A9
PhosPhoSitePlusQ9H6A9
Domains : Interpro (EBI)Pecanex   
Domain families : Pfam (Sanger)Pecanex_C (PF05041)   
Domain families : Pfam (NCBI)pfam05041   
Conserved Domain (NCBI)PCNX3
DMDM Disease mutations399909
Blocks (Seattle)PCNX3
SuperfamilyQ9H6A9
Human Protein AtlasENSG00000197136
Peptide AtlasQ9H6A9
IPIIPI00869136   IPI00890713   IPI00890747   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6A9
IntAct (EBI)Q9H6A9
FunCoupENSG00000197136
BioGRIDPCNX3
STRING (EMBL)PCNX3
ZODIACPCNX3
Ontologies - Pathways
QuickGOQ9H6A9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkPCNX3
Atlas of Cancer Signalling NetworkPCNX3
Wikipedia pathwaysPCNX3
Orthology - Evolution
OrthoDB399909
GeneTree (enSembl)ENSG00000197136
Phylogenetic Trees/Animal Genes : TreeFamPCNX3
HOVERGENQ9H6A9
HOGENOMQ9H6A9
Homologs : HomoloGenePCNX3
Homology/Alignments : Family Browser (UCSC)PCNX3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCNX3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCNX3
dbVarPCNX3
ClinVarPCNX3
1000_GenomesPCNX3 
Exome Variant ServerPCNX3
ExAC (Exome Aggregation Consortium)PCNX3 (select the gene name)
Genetic variants : HAPMAP399909
Genomic Variants (DGV)PCNX3 [DGVbeta]
DECIPHERPCNX3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCNX3 
Mutations
ICGC Data PortalPCNX3 
TCGA Data PortalPCNX3 
Broad Tumor PortalPCNX3
OASIS PortalPCNX3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPCNX3
BioMutasearch PCNX3
DgiDB (Drug Gene Interaction Database)PCNX3
DoCM (Curated mutations)PCNX3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCNX3 (select a term)
intoGenPCNX3
Cancer3DPCNX3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPCNX3
Genetic Testing Registry PCNX3
NextProtQ9H6A9 [Medical]
TSGene399909
GENETestsPCNX3
Target ValidationPCNX3
Huge Navigator PCNX3 [HugePedia]
snp3D : Map Gene to Disease399909
BioCentury BCIQPCNX3
ClinGenPCNX3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399909
Chemical/Pharm GKB GenePA38680
Clinical trialPCNX3
Miscellaneous
canSAR (ICR)PCNX3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCNX3
EVEXPCNX3
GoPubMedPCNX3
iHOPPCNX3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:53 CEST 2017

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