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PCNX4 (pecanex homolog 4 (Drosophila))

Identity

Alias_namesC14orf135
PCNXL4
chromosome 14 open reading frame 135
pecanex-like 4 (Drosophila)
Other aliasFBP2
HGNC (Hugo) PCNX4
LocusID (NCBI) 64430
Atlas_Id 78134
Location 14q23.1  [Link to chromosome band 14q23]
Location_base_pair Starts at 60091911 and ends at 60134814 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCNX4   20349
Cards
Entrez_Gene (NCBI)PCNX4  64430  pecanex homolog 4 (Drosophila)
AliasesC14orf135; FBP2; PCNXL4
GeneCards (Weizmann)PCNX4
Ensembl hg19 (Hinxton)ENSG00000126773 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126773 [Gene_View]  chr14:60091911-60134814 [Contig_View]  PCNX4 [Vega]
ICGC DataPortalENSG00000126773
TCGA cBioPortalPCNX4
AceView (NCBI)PCNX4
Genatlas (Paris)PCNX4
WikiGenes64430
SOURCE (Princeton)PCNX4
Genetics Home Reference (NIH)PCNX4
Genomic and cartography
GoldenPath hg38 (UCSC)PCNX4  -     chr14:60091911-60134814 +  14q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCNX4  -     14q23.1   [Description]    (hg19-Feb_2009)
EnsemblPCNX4 - 14q23.1 [CytoView hg19]  PCNX4 - 14q23.1 [CytoView hg38]
Mapping of homologs : NCBIPCNX4 [Mapview hg19]  PCNX4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA651916 AK022861 AK023008 AK095489 AL136581
RefSeq transcript (Entrez)NM_001330177 NM_022495
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCNX4
Cluster EST : UnigeneHs.509499 [ NCBI ]
CGAP (NCI)Hs.509499
Alternative Splicing GalleryENSG00000126773
Gene ExpressionPCNX4 [ NCBI-GEO ]   PCNX4 [ EBI - ARRAY_EXPRESS ]   PCNX4 [ SEEK ]   PCNX4 [ MEM ]
Gene Expression Viewer (FireBrowse)PCNX4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64430
GTEX Portal (Tissue expression)PCNX4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ63HM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ63HM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ63HM2
Splice isoforms : SwissVarQ63HM2
PhosPhoSitePlusQ63HM2
Domains : Interpro (EBI)Pecanex   
Domain families : Pfam (Sanger)Pecanex_C (PF05041)   
Domain families : Pfam (NCBI)pfam05041   
Conserved Domain (NCBI)PCNX4
DMDM Disease mutations64430
Blocks (Seattle)PCNX4
SuperfamilyQ63HM2
Human Protein AtlasENSG00000126773
Peptide AtlasQ63HM2
HPRD16604
IPIIPI00880082   IPI01026138   IPI01024974   IPI01024854   IPI01024751   IPI00877926   IPI00910986   IPI00783439   
Protein Interaction databases
DIP (DOE-UCLA)Q63HM2
IntAct (EBI)Q63HM2
FunCoupENSG00000126773
BioGRIDPCNX4
STRING (EMBL)PCNX4
ZODIACPCNX4
Ontologies - Pathways
QuickGOQ63HM2
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkPCNX4
Atlas of Cancer Signalling NetworkPCNX4
Wikipedia pathwaysPCNX4
Orthology - Evolution
OrthoDB64430
GeneTree (enSembl)ENSG00000126773
Phylogenetic Trees/Animal Genes : TreeFamPCNX4
HOVERGENQ63HM2
HOGENOMQ63HM2
Homologs : HomoloGenePCNX4
Homology/Alignments : Family Browser (UCSC)PCNX4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCNX4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCNX4
dbVarPCNX4
ClinVarPCNX4
1000_GenomesPCNX4 
Exome Variant ServerPCNX4
ExAC (Exome Aggregation Consortium)PCNX4 (select the gene name)
Genetic variants : HAPMAP64430
Genomic Variants (DGV)PCNX4 [DGVbeta]
DECIPHERPCNX4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCNX4 
Mutations
ICGC Data PortalPCNX4 
TCGA Data PortalPCNX4 
Broad Tumor PortalPCNX4
OASIS PortalPCNX4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPCNX4
BioMutasearch PCNX4
DgiDB (Drug Gene Interaction Database)PCNX4
DoCM (Curated mutations)PCNX4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCNX4 (select a term)
intoGenPCNX4
Cancer3DPCNX4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPCNX4
Genetic Testing Registry PCNX4
NextProtQ63HM2 [Medical]
TSGene64430
GENETestsPCNX4
Target ValidationPCNX4
Huge Navigator PCNX4 [HugePedia]
snp3D : Map Gene to Disease64430
BioCentury BCIQPCNX4
ClinGenPCNX4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64430
Chemical/Pharm GKB GenePA134919147
Clinical trialPCNX4
Miscellaneous
canSAR (ICR)PCNX4 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCNX4
EVEXPCNX4
GoPubMedPCNX4
iHOPPCNX4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:53 CEST 2017

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