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PCNXL3 (pecanex-like 3 (Drosophila))

Identity

Other alias-
HGNC (Hugo) PCNXL3
LocusID (NCBI) 399909
Atlas_Id 71769
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65383783 and ends at 65404910 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCNXL3   18760
Cards
Entrez_Gene (NCBI)PCNXL3  399909  pecanex-like 3 (Drosophila)
Aliases
GeneCards (Weizmann)PCNXL3
Ensembl hg19 (Hinxton)ENSG00000197136 [Gene_View]  chr11:65383783-65404910 [Contig_View]  PCNXL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197136 [Gene_View]  chr11:65383783-65404910 [Contig_View]  PCNXL3 [Vega]
ICGC DataPortalENSG00000197136
TCGA cBioPortalPCNXL3
AceView (NCBI)PCNXL3
Genatlas (Paris)PCNXL3
WikiGenes399909
SOURCE (Princeton)PCNXL3
Genetics Home Reference (NIH)PCNXL3
Genomic and cartography
GoldenPath hg19 (UCSC)PCNXL3  -     chr11:65383783-65404910 +  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCNXL3  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblPCNXL3 - 11q13.1 [CytoView hg19]  PCNXL3 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIPCNXL3 [Mapview hg19]  PCNXL3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA426047 AK308625 BE735110 BU616089 BX640978
RefSeq transcript (Entrez)NM_032223
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)PCNXL3
Cluster EST : UnigeneHs.380801 [ NCBI ]
CGAP (NCI)Hs.380801
Alternative Splicing GalleryENSG00000197136
Gene ExpressionPCNXL3 [ NCBI-GEO ]   PCNXL3 [ EBI - ARRAY_EXPRESS ]   PCNXL3 [ SEEK ]   PCNXL3 [ MEM ]
Gene Expression Viewer (FireBrowse)PCNXL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399909
GTEX Portal (Tissue expression)PCNXL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6A9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6A9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6A9
Splice isoforms : SwissVarQ9H6A9
PhosPhoSitePlusQ9H6A9
Domains : Interpro (EBI)Pecanex   
Domain families : Pfam (Sanger)Pecanex_C (PF05041)   
Domain families : Pfam (NCBI)pfam05041   
Conserved Domain (NCBI)PCNXL3
DMDM Disease mutations399909
Blocks (Seattle)PCNXL3
SuperfamilyQ9H6A9
Human Protein AtlasENSG00000197136
Peptide AtlasQ9H6A9
IPIIPI00869136   IPI00890713   IPI00890747   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6A9
IntAct (EBI)Q9H6A9
FunCoupENSG00000197136
BioGRIDPCNXL3
STRING (EMBL)PCNXL3
ZODIACPCNXL3
Ontologies - Pathways
QuickGOQ9H6A9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkPCNXL3
Atlas of Cancer Signalling NetworkPCNXL3
Wikipedia pathwaysPCNXL3
Orthology - Evolution
OrthoDB399909
GeneTree (enSembl)ENSG00000197136
Phylogenetic Trees/Animal Genes : TreeFamPCNXL3
HOVERGENQ9H6A9
HOGENOMQ9H6A9
Homologs : HomoloGenePCNXL3
Homology/Alignments : Family Browser (UCSC)PCNXL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCNXL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCNXL3
dbVarPCNXL3
ClinVarPCNXL3
1000_GenomesPCNXL3 
Exome Variant ServerPCNXL3
ExAC (Exome Aggregation Consortium)PCNXL3 (select the gene name)
Genetic variants : HAPMAP399909
Genomic Variants (DGV)PCNXL3 [DGVbeta]
DECIPHER (Syndromes)11:65383783-65404910  ENSG00000197136
CONAN: Copy Number AnalysisPCNXL3 
Mutations
ICGC Data PortalPCNXL3 
TCGA Data PortalPCNXL3 
Broad Tumor PortalPCNXL3
OASIS PortalPCNXL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCNXL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCNXL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCNXL3
DgiDB (Drug Gene Interaction Database)PCNXL3
DoCM (Curated mutations)PCNXL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCNXL3 (select a term)
intoGenPCNXL3
Cancer3DPCNXL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPCNXL3
Genetic Testing Registry PCNXL3
NextProtQ9H6A9 [Medical]
TSGene399909
GENETestsPCNXL3
Huge Navigator PCNXL3 [HugePedia]
snp3D : Map Gene to Disease399909
BioCentury BCIQPCNXL3
ClinGenPCNXL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399909
Chemical/Pharm GKB GenePA38680
Clinical trialPCNXL3
Miscellaneous
canSAR (ICR)PCNXL3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCNXL3
EVEXPCNXL3
GoPubMedPCNXL3
iHOPPCNXL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:10 CET 2017

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