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PCNXL4 (pecanex-like 4 (Drosophila))

Identity

Other aliasC14orf135
FBP2
HGNC (Hugo) PCNXL4
LocusID (NCBI) 64430
Atlas_Id 71770
Location 14q23.1  [Link to chromosome band 14q23]
Location_base_pair Starts at 60558629 and ends at 60601532 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCNXL4   20349
Cards
Entrez_Gene (NCBI)PCNXL4  64430  pecanex-like 4 (Drosophila)
AliasesC14orf135; FBP2
GeneCards (Weizmann)PCNXL4
Ensembl hg19 (Hinxton)ENSG00000126773 [Gene_View]  chr14:60558629-60601532 [Contig_View]  PCNXL4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000126773 [Gene_View]  chr14:60558629-60601532 [Contig_View]  PCNXL4 [Vega]
ICGC DataPortalENSG00000126773
TCGA cBioPortalPCNXL4
AceView (NCBI)PCNXL4
Genatlas (Paris)PCNXL4
WikiGenes64430
SOURCE (Princeton)PCNXL4
Genetics Home Reference (NIH)PCNXL4
Genomic and cartography
GoldenPath hg19 (UCSC)PCNXL4  -     chr14:60558629-60601532 +  14q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCNXL4  -     14q23.1   [Description]    (hg38-Dec_2013)
EnsemblPCNXL4 - 14q23.1 [CytoView hg19]  PCNXL4 - 14q23.1 [CytoView hg38]
Mapping of homologs : NCBIPCNXL4 [Mapview hg19]  PCNXL4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA651916 AK022861 AK023008 AK095489 AL136581
RefSeq transcript (Entrez)NM_022495
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)PCNXL4
Cluster EST : UnigeneHs.509499 [ NCBI ]
CGAP (NCI)Hs.509499
Alternative Splicing GalleryENSG00000126773
Gene ExpressionPCNXL4 [ NCBI-GEO ]   PCNXL4 [ EBI - ARRAY_EXPRESS ]   PCNXL4 [ SEEK ]   PCNXL4 [ MEM ]
Gene Expression Viewer (FireBrowse)PCNXL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64430
GTEX Portal (Tissue expression)PCNXL4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ63HM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ63HM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ63HM2
Splice isoforms : SwissVarQ63HM2
PhosPhoSitePlusQ63HM2
Domains : Interpro (EBI)Pecanex   
Domain families : Pfam (Sanger)Pecanex_C (PF05041)   
Domain families : Pfam (NCBI)pfam05041   
Conserved Domain (NCBI)PCNXL4
DMDM Disease mutations64430
Blocks (Seattle)PCNXL4
SuperfamilyQ63HM2
Human Protein AtlasENSG00000126773
Peptide AtlasQ63HM2
HPRD16604
IPIIPI00880082   IPI01026138   IPI01024974   IPI01024854   IPI01024751   IPI00877926   IPI00910986   IPI00783439   
Protein Interaction databases
DIP (DOE-UCLA)Q63HM2
IntAct (EBI)Q63HM2
FunCoupENSG00000126773
BioGRIDPCNXL4
STRING (EMBL)PCNXL4
ZODIACPCNXL4
Ontologies - Pathways
QuickGOQ63HM2
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkPCNXL4
Atlas of Cancer Signalling NetworkPCNXL4
Wikipedia pathwaysPCNXL4
Orthology - Evolution
OrthoDB64430
GeneTree (enSembl)ENSG00000126773
Phylogenetic Trees/Animal Genes : TreeFamPCNXL4
HOVERGENQ63HM2
HOGENOMQ63HM2
Homologs : HomoloGenePCNXL4
Homology/Alignments : Family Browser (UCSC)PCNXL4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCNXL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCNXL4
dbVarPCNXL4
ClinVarPCNXL4
1000_GenomesPCNXL4 
Exome Variant ServerPCNXL4
ExAC (Exome Aggregation Consortium)PCNXL4 (select the gene name)
Genetic variants : HAPMAP64430
Genomic Variants (DGV)PCNXL4 [DGVbeta]
DECIPHER (Syndromes)14:60558629-60601532  ENSG00000126773
CONAN: Copy Number AnalysisPCNXL4 
Mutations
ICGC Data PortalPCNXL4 
TCGA Data PortalPCNXL4 
Broad Tumor PortalPCNXL4
OASIS PortalPCNXL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCNXL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCNXL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCNXL4
DgiDB (Drug Gene Interaction Database)PCNXL4
DoCM (Curated mutations)PCNXL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCNXL4 (select a term)
intoGenPCNXL4
Cancer3DPCNXL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPCNXL4
Genetic Testing Registry PCNXL4
NextProtQ63HM2 [Medical]
TSGene64430
GENETestsPCNXL4
Huge Navigator PCNXL4 [HugePedia]
snp3D : Map Gene to Disease64430
BioCentury BCIQPCNXL4
ClinGenPCNXL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64430
Chemical/Pharm GKB GenePA134919147
Clinical trialPCNXL4
Miscellaneous
canSAR (ICR)PCNXL4 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCNXL4
EVEXPCNXL4
GoPubMedPCNXL4
iHOPPCNXL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:10 CET 2017

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