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PCOLCE2 (procollagen C-endopeptidase enhancer 2)

Identity

Other aliasPCPE2
HGNC (Hugo) PCOLCE2
LocusID (NCBI) 26577
Atlas_Id 56994
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 142817860 and ends at 142889203 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCOLCE2   8739
Cards
Entrez_Gene (NCBI)PCOLCE2  26577  procollagen C-endopeptidase enhancer 2
AliasesPCPE2
GeneCards (Weizmann)PCOLCE2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:142817860-142889203 [Contig_View]  PCOLCE2 [Vega]
TCGA cBioPortalPCOLCE2
AceView (NCBI)PCOLCE2
Genatlas (Paris)PCOLCE2
WikiGenes26577
SOURCE (Princeton)PCOLCE2
Genetics Home Reference (NIH)PCOLCE2
Genomic and cartography
GoldenPath hg38 (UCSC)PCOLCE2  -     chr3:142817860-142889203 -  3q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCOLCE2  -     3q23   [Description]    (hg19-Feb_2009)
EnsemblPCOLCE2 - 3q23 [CytoView hg19]  PCOLCE2 - 3q23 [CytoView hg38]
Mapping of homologs : NCBIPCOLCE2 [Mapview hg19]  PCOLCE2 [Mapview hg38]
OMIM607064   
Gene and transcription
Genbank (Entrez)AF098269 AK075478 AK223633 AK315121 AY035400
RefSeq transcript (Entrez)NM_013363
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCOLCE2
Cluster EST : UnigeneHs.8944 [ NCBI ]
CGAP (NCI)Hs.8944
Gene ExpressionPCOLCE2 [ NCBI-GEO ]   PCOLCE2 [ EBI - ARRAY_EXPRESS ]   PCOLCE2 [ SEEK ]   PCOLCE2 [ MEM ]
Gene Expression Viewer (FireBrowse)PCOLCE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26577
GTEX Portal (Tissue expression)PCOLCE2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKZ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKZ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKZ9
Splice isoforms : SwissVarQ9UKZ9
PhosPhoSitePlusQ9UKZ9
Domaine pattern : Prosite (Expaxy)CUB (PS01180)    NTR (PS50189)   
Domains : Interpro (EBI)CUB_dom    Netrin_domain    Netrin_module_non-TIMP    TIMP-like_OB-fold   
Domain families : Pfam (Sanger)CUB (PF00431)    NTR (PF01759)   
Domain families : Pfam (NCBI)pfam00431    pfam01759   
Domain families : Smart (EMBL)C345C (SM00643)  CUB (SM00042)  
Conserved Domain (NCBI)PCOLCE2
DMDM Disease mutations26577
Blocks (Seattle)PCOLCE2
SuperfamilyQ9UKZ9
Peptide AtlasQ9UKZ9
IPIIPI00002543   IPI00797399   IPI00947233   IPI00946398   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKZ9
IntAct (EBI)Q9UKZ9
BioGRIDPCOLCE2
STRING (EMBL)PCOLCE2
ZODIACPCOLCE2
Ontologies - Pathways
QuickGOQ9UKZ9
Ontology : AmiGOcollagen binding  heparin binding  positive regulation of peptidase activity  peptidase activator activity  extracellular exosome  cellular response to leukemia inhibitory factor  
Ontology : EGO-EBIcollagen binding  heparin binding  positive regulation of peptidase activity  peptidase activator activity  extracellular exosome  cellular response to leukemia inhibitory factor  
NDEx NetworkPCOLCE2
Atlas of Cancer Signalling NetworkPCOLCE2
Wikipedia pathwaysPCOLCE2
Orthology - Evolution
OrthoDB26577
Phylogenetic Trees/Animal Genes : TreeFamPCOLCE2
HOVERGENQ9UKZ9
HOGENOMQ9UKZ9
Homologs : HomoloGenePCOLCE2
Homology/Alignments : Family Browser (UCSC)PCOLCE2
Gene fusions - Rearrangements
Fusion: Tumor Portal PCOLCE2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCOLCE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCOLCE2
dbVarPCOLCE2
ClinVarPCOLCE2
1000_GenomesPCOLCE2 
Exome Variant ServerPCOLCE2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP26577
Genomic Variants (DGV)PCOLCE2 [DGVbeta]
DECIPHERPCOLCE2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCOLCE2 
Mutations
ICGC Data PortalPCOLCE2 
TCGA Data PortalPCOLCE2 
Broad Tumor PortalPCOLCE2
OASIS PortalPCOLCE2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCOLCE2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCOLCE2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCOLCE2
DgiDB (Drug Gene Interaction Database)PCOLCE2
DoCM (Curated mutations)PCOLCE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCOLCE2 (select a term)
intoGenPCOLCE2
Cancer3DPCOLCE2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607064   
Orphanet
MedgenPCOLCE2
Genetic Testing Registry PCOLCE2
NextProtQ9UKZ9 [Medical]
TSGene26577
GENETestsPCOLCE2
Target ValidationPCOLCE2
Huge Navigator PCOLCE2 [HugePedia]
snp3D : Map Gene to Disease26577
BioCentury BCIQPCOLCE2
ClinGenPCOLCE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26577
Chemical/Pharm GKB GenePA33084
Clinical trialPCOLCE2
Miscellaneous
canSAR (ICR)PCOLCE2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCOLCE2
EVEXPCOLCE2
GoPubMedPCOLCE2
iHOPPCOLCE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:04:27 CET 2017

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