Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCOTH (Pro-X-Gly collagen triple helix like repeat containing)

Identity

Other aliasC1QTNF9B-AS1
HGNC (Hugo) PCOTH
LocusID (NCBI) 542767
Atlas_Id 56736
Location 13q12.12  [Link to chromosome band 13q12]
Location_base_pair Starts at 23888887 and ends at 23892104 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCOTH   39839
Cards
Entrez_Gene (NCBI)PCOTH  542767  Pro-X-Gly collagen triple helix like repeat containing
AliasesC1QTNF9B-AS1
GeneCards (Weizmann)PCOTH
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:23888887-23892104 [Contig_View]  PCOTH [Vega]
TCGA cBioPortalPCOTH
AceView (NCBI)PCOTH
Genatlas (Paris)PCOTH
WikiGenes542767
SOURCE (Princeton)PCOTH
Genetics Home Reference (NIH)PCOTH
Genomic and cartography
GoldenPath hg38 (UCSC)PCOTH  -     chr13:23888887-23892104 +  13q12.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCOTH  -     13q12.12   [Description]    (hg19-Feb_2009)
EnsemblPCOTH - 13q12.12 [CytoView hg19]  PCOTH - 13q12.12 [CytoView hg38]
Mapping of homologs : NCBIPCOTH [Mapview hg19]  PCOTH [Mapview hg38]
OMIM617122   
Gene and transcription
Genbank (Entrez)AB113650 BC015452 BC073902 BC132842 BC132846
RefSeq transcript (Entrez)NM_001014442 NM_001135816 NM_001348112 NM_001348113 NM_001348114
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCOTH
Cluster EST : UnigeneHs.642624 [ NCBI ]
CGAP (NCI)Hs.642624
Gene ExpressionPCOTH [ NCBI-GEO ]   PCOTH [ EBI - ARRAY_EXPRESS ]   PCOTH [ SEEK ]   PCOTH [ MEM ]
Gene Expression Viewer (FireBrowse)PCOTH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)542767
GTEX Portal (Tissue expression)PCOTH
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ58A44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ58A44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ58A44
Splice isoforms : SwissVarQ58A44
PhosPhoSitePlusQ58A44
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCOTH
DMDM Disease mutations542767
Blocks (Seattle)PCOTH
SuperfamilyQ58A44
Peptide AtlasQ58A44
IPIIPI00555685   IPI00914609   
Protein Interaction databases
DIP (DOE-UCLA)Q58A44
IntAct (EBI)Q58A44
BioGRIDPCOTH
STRING (EMBL)PCOTH
ZODIACPCOTH
Ontologies - Pathways
QuickGOQ58A44
Ontology : AmiGOprotein binding  cytoplasm  
Ontology : EGO-EBIprotein binding  cytoplasm  
NDEx NetworkPCOTH
Atlas of Cancer Signalling NetworkPCOTH
Wikipedia pathwaysPCOTH
Orthology - Evolution
OrthoDB542767
Phylogenetic Trees/Animal Genes : TreeFamPCOTH
HOVERGENQ58A44
HOGENOMQ58A44
Homologs : HomoloGenePCOTH
Homology/Alignments : Family Browser (UCSC)PCOTH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCOTH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCOTH
dbVarPCOTH
ClinVarPCOTH
1000_GenomesPCOTH 
Exome Variant ServerPCOTH
ExAC (Exome Aggregation Consortium)PCOTH (select the gene name)
Genetic variants : HAPMAP542767
Genomic Variants (DGV)PCOTH [DGVbeta]
DECIPHERPCOTH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCOTH 
Mutations
ICGC Data PortalPCOTH 
TCGA Data PortalPCOTH 
Broad Tumor PortalPCOTH
OASIS PortalPCOTH [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPCOTH
BioMutasearch PCOTH
DgiDB (Drug Gene Interaction Database)PCOTH
DoCM (Curated mutations)PCOTH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCOTH (select a term)
intoGenPCOTH
Cancer3DPCOTH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617122   
Orphanet
MedgenPCOTH
Genetic Testing Registry PCOTH
NextProtQ58A44 [Medical]
TSGene542767
GENETestsPCOTH
Target ValidationPCOTH
Huge Navigator PCOTH [HugePedia]
snp3D : Map Gene to Disease542767
BioCentury BCIQPCOTH
ClinGenPCOTH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD542767
Clinical trialPCOTH
Miscellaneous
canSAR (ICR)PCOTH (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCOTH
EVEXPCOTH
GoPubMedPCOTH
iHOPPCOTH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 25 19:24:05 CEST 2017

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