Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PCP2 (Purkinje cell protein 2)

Identity

Alias_symbol (synonym)MGC41903
GPSM4
Other alias
HGNC (Hugo) PCP2
LocusID (NCBI) 126006
Atlas_Id 71773
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7631615 and ends at 7633012 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCP2   30209
Cards
Entrez_Gene (NCBI)PCP2  126006  Purkinje cell protein 2
AliasesGPSM4
GeneCards (Weizmann)PCP2
Ensembl hg19 (Hinxton)ENSG00000174788 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174788 [Gene_View]  chr19:7631615-7633012 [Contig_View]  PCP2 [Vega]
ICGC DataPortalENSG00000174788
TCGA cBioPortalPCP2
AceView (NCBI)PCP2
Genatlas (Paris)PCP2
WikiGenes126006
SOURCE (Princeton)PCP2
Genetics Home Reference (NIH)PCP2
Genomic and cartography
GoldenPath hg38 (UCSC)PCP2  -     chr19:7631615-7633012 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCP2  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblPCP2 - 19p13.2 [CytoView hg19]  PCP2 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIPCP2 [Mapview hg19]  PCP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055767 AK130855 BC025387 BC038715 BX281028
RefSeq transcript (Entrez)NM_001271830 NM_174895
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCP2
Cluster EST : UnigeneHs.673964 [ NCBI ]
CGAP (NCI)Hs.673964
Alternative Splicing GalleryENSG00000174788
Gene ExpressionPCP2 [ NCBI-GEO ]   PCP2 [ EBI - ARRAY_EXPRESS ]   PCP2 [ SEEK ]   PCP2 [ MEM ]
Gene Expression Viewer (FireBrowse)PCP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126006
GTEX Portal (Tissue expression)PCP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVA1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVA1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVA1
Splice isoforms : SwissVarQ8IVA1
PhosPhoSitePlusQ8IVA1
Domaine pattern : Prosite (Expaxy)GOLOCO (PS50877)   
Domains : Interpro (EBI)GoLoco_motif   
Domain families : Pfam (Sanger)GoLoco (PF02188)   
Domain families : Pfam (NCBI)pfam02188   
Domain families : Smart (EMBL)GoLoco (SM00390)  
Conserved Domain (NCBI)PCP2
DMDM Disease mutations126006
Blocks (Seattle)PCP2
SuperfamilyQ8IVA1
Human Protein AtlasENSG00000174788
Peptide AtlasQ8IVA1
HPRD18723
IPIIPI00182598   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVA1
IntAct (EBI)Q8IVA1
FunCoupENSG00000174788
BioGRIDPCP2
STRING (EMBL)PCP2
ZODIACPCP2
Ontologies - Pathways
QuickGOQ8IVA1
Ontology : AmiGOGTPase regulator activity  regulation of catalytic activity  
Ontology : EGO-EBIGTPase regulator activity  regulation of catalytic activity  
NDEx NetworkPCP2
Atlas of Cancer Signalling NetworkPCP2
Wikipedia pathwaysPCP2
Orthology - Evolution
OrthoDB126006
GeneTree (enSembl)ENSG00000174788
Phylogenetic Trees/Animal Genes : TreeFamPCP2
HOVERGENQ8IVA1
HOGENOMQ8IVA1
Homologs : HomoloGenePCP2
Homology/Alignments : Family Browser (UCSC)PCP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCP2
dbVarPCP2
ClinVarPCP2
1000_GenomesPCP2 
Exome Variant ServerPCP2
ExAC (Exome Aggregation Consortium)PCP2 (select the gene name)
Genetic variants : HAPMAP126006
Genomic Variants (DGV)PCP2 [DGVbeta]
DECIPHERPCP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCP2 
Mutations
ICGC Data PortalPCP2 
TCGA Data PortalPCP2 
Broad Tumor PortalPCP2
OASIS PortalPCP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCP2
DgiDB (Drug Gene Interaction Database)PCP2
DoCM (Curated mutations)PCP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCP2 (select a term)
intoGenPCP2
Cancer3DPCP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPCP2
Genetic Testing Registry PCP2
NextProtQ8IVA1 [Medical]
TSGene126006
GENETestsPCP2
Target ValidationPCP2
Huge Navigator PCP2 [HugePedia]
snp3D : Map Gene to Disease126006
BioCentury BCIQPCP2
ClinGenPCP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126006
Chemical/Pharm GKB GenePA134864901
Clinical trialPCP2
Miscellaneous
canSAR (ICR)PCP2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCP2
EVEXPCP2
GoPubMedPCP2
iHOPPCP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:34:12 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.