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PCP4L1 (Purkinje cell protein 4 like 1)

Identity

Alias_namespurkinje cell protein 4 like 1
Alias_symbol (synonym)IQM1
Other alias
HGNC (Hugo) PCP4L1
LocusID (NCBI) 654790
Atlas_Id 54532
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 161258727 and ends at 161285450 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATF6 (1q23.3) / PCP4L1 (1q23.3)PCP4L1 (1q23.3) / NDUFS2 (1q23.3)PCP4L1 (1q23.3) / SDHC (1q23.3)
ATF6 1q23.3 / PCP4L1 1q23.3PCP4L1 1q23.3 / NDUFS2 1q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCP4L1   20448
Cards
Entrez_Gene (NCBI)PCP4L1  654790  Purkinje cell protein 4 like 1
AliasesIQM1
GeneCards (Weizmann)PCP4L1
Ensembl hg19 (Hinxton)ENSG00000248485 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248485 [Gene_View]  chr1:161258727-161285450 [Contig_View]  PCP4L1 [Vega]
ICGC DataPortalENSG00000248485
TCGA cBioPortalPCP4L1
AceView (NCBI)PCP4L1
Genatlas (Paris)PCP4L1
WikiGenes654790
SOURCE (Princeton)PCP4L1
Genetics Home Reference (NIH)PCP4L1
Genomic and cartography
GoldenPath hg38 (UCSC)PCP4L1  -     chr1:161258727-161285450 +  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCP4L1  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblPCP4L1 - 1q23.3 [CytoView hg19]  PCP4L1 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBIPCP4L1 [Mapview hg19]  PCP4L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC028905 BC067884 BC147003 BC147004 CD237602
RefSeq transcript (Entrez)NM_001102566
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCP4L1
Cluster EST : UnigeneHs.433150 [ NCBI ]
CGAP (NCI)Hs.433150
Alternative Splicing GalleryENSG00000248485
Gene ExpressionPCP4L1 [ NCBI-GEO ]   PCP4L1 [ EBI - ARRAY_EXPRESS ]   PCP4L1 [ SEEK ]   PCP4L1 [ MEM ]
Gene Expression Viewer (FireBrowse)PCP4L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)654790
GTEX Portal (Tissue expression)PCP4L1
Human Protein AtlasENSG00000248485-PCP4L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKN8
Splice isoforms : SwissVarA6NKN8
PhosPhoSitePlusA6NKN8
Domains : Interpro (EBI)PCP4-like_1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCP4L1
DMDM Disease mutations654790
Blocks (Seattle)PCP4L1
SuperfamilyA6NKN8
Human Protein Atlas [tissue]ENSG00000248485-PCP4L1 [tissue]
Peptide AtlasA6NKN8
IPIIPI00181706   
Protein Interaction databases
DIP (DOE-UCLA)A6NKN8
IntAct (EBI)A6NKN8
FunCoupENSG00000248485
BioGRIDPCP4L1
STRING (EMBL)PCP4L1
ZODIACPCP4L1
Ontologies - Pathways
QuickGOA6NKN8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPCP4L1
Atlas of Cancer Signalling NetworkPCP4L1
Wikipedia pathwaysPCP4L1
Orthology - Evolution
OrthoDB654790
GeneTree (enSembl)ENSG00000248485
Phylogenetic Trees/Animal Genes : TreeFamPCP4L1
HOVERGENA6NKN8
HOGENOMA6NKN8
Homologs : HomoloGenePCP4L1
Homology/Alignments : Family Browser (UCSC)PCP4L1
Gene fusions - Rearrangements
Fusion : MitelmanATF6/PCP4L1 [1q23.3/1q23.3]  [t(1;1)(q23;q23)]  
Fusion : MitelmanPCP4L1/NDUFS2 [1q23.3/1q23.3]  [t(1;1)(q23;q23)]  
Fusion : MitelmanPCP4L1/SDHC [1q23.3/1q23.3]  [t(1;1)(q23;q23)]  
Fusion: TCGA_MDACCATF6 1q23.3 PCP4L1 1q23.3 LUAD
Fusion: TCGA_MDACCPCP4L1 1q23.3 NDUFS2 1q23.3 BLCA
Tumor Fusion PortalPCP4L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCP4L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCP4L1
dbVarPCP4L1
ClinVarPCP4L1
1000_GenomesPCP4L1 
Exome Variant ServerPCP4L1
ExAC (Exome Aggregation Consortium)ENSG00000248485
GNOMAD BrowserENSG00000248485
Genetic variants : HAPMAP654790
Genomic Variants (DGV)PCP4L1 [DGVbeta]
DECIPHERPCP4L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCP4L1 
Mutations
ICGC Data PortalPCP4L1 
TCGA Data PortalPCP4L1 
Broad Tumor PortalPCP4L1
OASIS PortalPCP4L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCP4L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCP4L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCP4L1
DgiDB (Drug Gene Interaction Database)PCP4L1
DoCM (Curated mutations)PCP4L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCP4L1 (select a term)
intoGenPCP4L1
Cancer3DPCP4L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPCP4L1
MedgenPCP4L1
Genetic Testing Registry PCP4L1
NextProtA6NKN8 [Medical]
TSGene654790
GENETestsPCP4L1
Target ValidationPCP4L1
Huge Navigator PCP4L1 [HugePedia]
snp3D : Map Gene to Disease654790
BioCentury BCIQPCP4L1
ClinGenPCP4L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD654790
Chemical/Pharm GKB GenePA143485573
Clinical trialPCP4L1
Miscellaneous
canSAR (ICR)PCP4L1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCP4L1
EVEXPCP4L1
GoPubMedPCP4L1
iHOPPCP4L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:28:06 CET 2017

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