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PCTP (phosphatidylcholine transfer protein)

Identity

Other aliasPC-TP
STARD2
HGNC (Hugo) PCTP
LocusID (NCBI) 58488
Atlas_Id 56714
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 55751105 and ends at 55777387 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATXN1 (6p22.3) / PCTP (17q22)MSI2 (17q22) / PCTP (17q22)PCTP (17q22) / CALCOCO2 (17q21.32)
RARA (17q21.2) / PCTP (17q22)TRIM37 (17q22) / PCTP (17q22)USP32 (17q23.1) / PCTP (17q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCTP   8752
Cards
Entrez_Gene (NCBI)PCTP  58488  phosphatidylcholine transfer protein
AliasesPC-TP; STARD2
GeneCards (Weizmann)PCTP
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:55751105-55777387 [Contig_View]  PCTP [Vega]
TCGA cBioPortalPCTP
AceView (NCBI)PCTP
Genatlas (Paris)PCTP
WikiGenes58488
SOURCE (Princeton)PCTP
Genetics Home Reference (NIH)PCTP
Genomic and cartography
GoldenPath hg38 (UCSC)PCTP  -     chr17:55751105-55777387 +  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCTP  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblPCTP - 17q22 [CytoView hg19]  PCTP - 17q22 [CytoView hg38]
Mapping of homologs : NCBIPCTP [Mapview hg19]  PCTP [Mapview hg38]
OMIM606055   
Gene and transcription
Genbank (Entrez)AF087857 AF114430 AF151638 AK024667 AK058120
RefSeq transcript (Entrez)NM_001102402 NM_001330377 NM_001330378 NM_021213
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCTP
Cluster EST : UnigeneHs.285218 [ NCBI ]
CGAP (NCI)Hs.285218
Gene ExpressionPCTP [ NCBI-GEO ]   PCTP [ EBI - ARRAY_EXPRESS ]   PCTP [ SEEK ]   PCTP [ MEM ]
Gene Expression Viewer (FireBrowse)PCTP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58488
GTEX Portal (Tissue expression)PCTP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKL6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKL6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKL6
Splice isoforms : SwissVarQ9UKL6
PhosPhoSitePlusQ9UKL6
Domaine pattern : Prosite (Expaxy)START (PS50848)   
Domains : Interpro (EBI)START-like_dom    START_lipid-bd_dom   
Domain families : Pfam (Sanger)START (PF01852)   
Domain families : Pfam (NCBI)pfam01852   
Domain families : Smart (EMBL)START (SM00234)  
Conserved Domain (NCBI)PCTP
DMDM Disease mutations58488
Blocks (Seattle)PCTP
PDB (SRS)1LN1    1LN2    1LN3   
PDB (PDBSum)1LN1    1LN2    1LN3   
PDB (IMB)1LN1    1LN2    1LN3   
PDB (RSDB)1LN1    1LN2    1LN3   
Structural Biology KnowledgeBase1LN1    1LN2    1LN3   
SCOP (Structural Classification of Proteins)1LN1    1LN2    1LN3   
CATH (Classification of proteins structures)1LN1    1LN2    1LN3   
SuperfamilyQ9UKL6
Peptide AtlasQ9UKL6
IPIIPI00296927   IPI00645437   IPI00940319   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKL6
IntAct (EBI)Q9UKL6
BioGRIDPCTP
STRING (EMBL)PCTP
ZODIACPCTP
Ontologies - Pathways
QuickGOQ9UKL6
Ontology : AmiGOprotein binding  cytosol  cytosol  phosphatidylcholine biosynthetic process  lipid transport  phosphatidylcholine transporter activity  phosphatidylcholine transporter activity  phospholipid transport  phosphatidylcholine binding  
Ontology : EGO-EBIprotein binding  cytosol  cytosol  phosphatidylcholine biosynthetic process  lipid transport  phosphatidylcholine transporter activity  phosphatidylcholine transporter activity  phospholipid transport  phosphatidylcholine binding  
NDEx NetworkPCTP
Atlas of Cancer Signalling NetworkPCTP
Wikipedia pathwaysPCTP
Orthology - Evolution
OrthoDB58488
Phylogenetic Trees/Animal Genes : TreeFamPCTP
HOVERGENQ9UKL6
HOGENOMQ9UKL6
Homologs : HomoloGenePCTP
Homology/Alignments : Family Browser (UCSC)PCTP
Gene fusions - Rearrangements
Fusion: Tumor Portal PCTP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCTP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCTP
dbVarPCTP
ClinVarPCTP
1000_GenomesPCTP 
Exome Variant ServerPCTP
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP58488
Genomic Variants (DGV)PCTP [DGVbeta]
DECIPHERPCTP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCTP 
Mutations
ICGC Data PortalPCTP 
TCGA Data PortalPCTP 
Broad Tumor PortalPCTP
OASIS PortalPCTP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCTP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCTP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCTP
DgiDB (Drug Gene Interaction Database)PCTP
DoCM (Curated mutations)PCTP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCTP (select a term)
intoGenPCTP
Cancer3DPCTP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606055   
Orphanet
MedgenPCTP
Genetic Testing Registry PCTP
NextProtQ9UKL6 [Medical]
TSGene58488
GENETestsPCTP
Target ValidationPCTP
Huge Navigator PCTP [HugePedia]
snp3D : Map Gene to Disease58488
BioCentury BCIQPCTP
ClinGenPCTP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58488
Chemical/Pharm GKB GenePA33098
Clinical trialPCTP
Miscellaneous
canSAR (ICR)PCTP (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCTP
EVEXPCTP
GoPubMedPCTP
iHOPPCTP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:04:28 CET 2017

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