Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCYOX1L (prenylcysteine oxidase 1 like)

Identity

Alias_symbol (synonym)MGC3265
Other alias-
HGNC (Hugo) PCYOX1L
LocusID (NCBI) 78991
Atlas_Id 71778
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 149358007 and ends at 149369658 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCYOX1L (5q32) / PCYOX1L (5q32)STOM (9q33.2) / PCYOX1L (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCYOX1L   28477
Cards
Entrez_Gene (NCBI)PCYOX1L  78991  prenylcysteine oxidase 1 like
Aliases
GeneCards (Weizmann)PCYOX1L
Ensembl hg19 (Hinxton)ENSG00000145882 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145882 [Gene_View]  chr5:149358007-149369658 [Contig_View]  PCYOX1L [Vega]
ICGC DataPortalENSG00000145882
TCGA cBioPortalPCYOX1L
AceView (NCBI)PCYOX1L
Genatlas (Paris)PCYOX1L
WikiGenes78991
SOURCE (Princeton)PCYOX1L
Genetics Home Reference (NIH)PCYOX1L
Genomic and cartography
GoldenPath hg38 (UCSC)PCYOX1L  -     chr5:149358007-149369658 +  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCYOX1L  -     5q32   [Description]    (hg19-Feb_2009)
EnsemblPCYOX1L - 5q32 [CytoView hg19]  PCYOX1L - 5q32 [CytoView hg38]
Mapping of homologs : NCBIPCYOX1L [Mapview hg19]  PCYOX1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF451985 AK075414 AK090410 AK127281 AL834220
RefSeq transcript (Entrez)NM_001301054 NM_001301057 NM_024028
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCYOX1L
Cluster EST : UnigeneHs.644397 [ NCBI ]
CGAP (NCI)Hs.644397
Alternative Splicing GalleryENSG00000145882
Gene ExpressionPCYOX1L [ NCBI-GEO ]   PCYOX1L [ EBI - ARRAY_EXPRESS ]   PCYOX1L [ SEEK ]   PCYOX1L [ MEM ]
Gene Expression Viewer (FireBrowse)PCYOX1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)78991
GTEX Portal (Tissue expression)PCYOX1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBM8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBM8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBM8
Splice isoforms : SwissVarQ8NBM8
Catalytic activity : Enzyme1.8.3.- [ Enzyme-Expasy ]   1.8.3.-1.8.3.- [ IntEnz-EBI ]   1.8.3.- [ BRENDA ]   1.8.3.- [ KEGG ]   
PhosPhoSitePlusQ8NBM8
Domains : Interpro (EBI)FAD/NAD-binding_dom    Prenylcys_lyase    Prenylcysteine_Oxase   
Domain families : Pfam (Sanger)Prenylcys_lyase (PF07156)   
Domain families : Pfam (NCBI)pfam07156   
Conserved Domain (NCBI)PCYOX1L
DMDM Disease mutations78991
Blocks (Seattle)PCYOX1L
SuperfamilyQ8NBM8
Human Protein AtlasENSG00000145882
Peptide AtlasQ8NBM8
HPRD14552
IPIIPI00184180   IPI00829942   IPI00966484   IPI00985351   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBM8
IntAct (EBI)Q8NBM8
FunCoupENSG00000145882
BioGRIDPCYOX1L
STRING (EMBL)PCYOX1L
ZODIACPCYOX1L
Ontologies - Pathways
QuickGOQ8NBM8
Ontology : AmiGOprenylcysteine oxidase activity  platelet degranulation  extracellular region  vacuolar membrane  membrane  prenylated protein catabolic process  prenylcysteine catabolic process  platelet alpha granule lumen  oxidation-reduction process  
Ontology : EGO-EBIprenylcysteine oxidase activity  platelet degranulation  extracellular region  vacuolar membrane  membrane  prenylated protein catabolic process  prenylcysteine catabolic process  platelet alpha granule lumen  oxidation-reduction process  
NDEx NetworkPCYOX1L
Atlas of Cancer Signalling NetworkPCYOX1L
Wikipedia pathwaysPCYOX1L
Orthology - Evolution
OrthoDB78991
GeneTree (enSembl)ENSG00000145882
Phylogenetic Trees/Animal Genes : TreeFamPCYOX1L
HOVERGENQ8NBM8
HOGENOMQ8NBM8
Homologs : HomoloGenePCYOX1L
Homology/Alignments : Family Browser (UCSC)PCYOX1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCYOX1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCYOX1L
dbVarPCYOX1L
ClinVarPCYOX1L
1000_GenomesPCYOX1L 
Exome Variant ServerPCYOX1L
ExAC (Exome Aggregation Consortium)PCYOX1L (select the gene name)
Genetic variants : HAPMAP78991
Genomic Variants (DGV)PCYOX1L [DGVbeta]
DECIPHERPCYOX1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCYOX1L 
Mutations
ICGC Data PortalPCYOX1L 
TCGA Data PortalPCYOX1L 
Broad Tumor PortalPCYOX1L
OASIS PortalPCYOX1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCYOX1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCYOX1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCYOX1L
DgiDB (Drug Gene Interaction Database)PCYOX1L
DoCM (Curated mutations)PCYOX1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCYOX1L (select a term)
intoGenPCYOX1L
Cancer3DPCYOX1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPCYOX1L
Genetic Testing Registry PCYOX1L
NextProtQ8NBM8 [Medical]
TSGene78991
GENETestsPCYOX1L
Target ValidationPCYOX1L
Huge Navigator PCYOX1L [HugePedia]
snp3D : Map Gene to Disease78991
BioCentury BCIQPCYOX1L
ClinGenPCYOX1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD78991
Chemical/Pharm GKB GenePA147357517
Clinical trialPCYOX1L
Miscellaneous
canSAR (ICR)PCYOX1L (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCYOX1L
EVEXPCYOX1L
GoPubMedPCYOX1L
iHOPPCYOX1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:13 CEST 2017

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