Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCYT2 (phosphate cytidylyltransferase 2, ethanolamine)

Identity

Alias_symbol (synonym)ET
Other alias
HGNC (Hugo) PCYT2
LocusID (NCBI) 5833
Atlas_Id 52792
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 81902901 and ends at 81911477 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SRCIN1 (17q12) / PCYT2 (17q25.3)SRCIN1 17q12 / PCYT2 17q25.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCYT2   8756
Cards
Entrez_Gene (NCBI)PCYT2  5833  phosphate cytidylyltransferase 2, ethanolamine
AliasesET
GeneCards (Weizmann)PCYT2
Ensembl hg19 (Hinxton)ENSG00000185813 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185813 [Gene_View]  chr17:81902901-81911477 [Contig_View]  PCYT2 [Vega]
ICGC DataPortalENSG00000185813
TCGA cBioPortalPCYT2
AceView (NCBI)PCYT2
Genatlas (Paris)PCYT2
WikiGenes5833
SOURCE (Princeton)PCYT2
Genetics Home Reference (NIH)PCYT2
Genomic and cartography
GoldenPath hg38 (UCSC)PCYT2  -     chr17:81902901-81911477 -  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCYT2  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblPCYT2 - 17q25.3 [CytoView hg19]  PCYT2 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIPCYT2 [Mapview hg19]  PCYT2 [Mapview hg38]
OMIM602679   
Gene and transcription
Genbank (Entrez)AK093328 AK297996 AK301723 AK315777 AK316385
RefSeq transcript (Entrez)NM_001184917 NM_001256433 NM_001256434 NM_001256435 NM_001282203 NM_001282204 NM_001330518 NM_002861
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCYT2
Cluster EST : UnigeneHs.569843 [ NCBI ]
CGAP (NCI)Hs.569843
Alternative Splicing GalleryENSG00000185813
Gene ExpressionPCYT2 [ NCBI-GEO ]   PCYT2 [ EBI - ARRAY_EXPRESS ]   PCYT2 [ SEEK ]   PCYT2 [ MEM ]
Gene Expression Viewer (FireBrowse)PCYT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5833
GTEX Portal (Tissue expression)PCYT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99447   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99447  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99447
Splice isoforms : SwissVarQ99447
Catalytic activity : Enzyme2.7.7.14 [ Enzyme-Expasy ]   2.7.7.142.7.7.14 [ IntEnz-EBI ]   2.7.7.14 [ BRENDA ]   2.7.7.14 [ KEGG ]   
PhosPhoSitePlusQ99447
Domains : Interpro (EBI)Cyt_trans-like    Rossmann-like_a/b/a_fold   
Domain families : Pfam (Sanger)CTP_transf_like (PF01467)   
Domain families : Pfam (NCBI)pfam01467   
Conserved Domain (NCBI)PCYT2
DMDM Disease mutations5833
Blocks (Seattle)PCYT2
PDB (SRS)3ELB    4XSV   
PDB (PDBSum)3ELB    4XSV   
PDB (IMB)3ELB    4XSV   
PDB (RSDB)3ELB    4XSV   
Structural Biology KnowledgeBase3ELB    4XSV   
SCOP (Structural Classification of Proteins)3ELB    4XSV   
CATH (Classification of proteins structures)3ELB    4XSV   
SuperfamilyQ99447
Human Protein AtlasENSG00000185813
Peptide AtlasQ99447
HPRD04059
IPIIPI00015285   IPI01015407   IPI00981027   
Protein Interaction databases
DIP (DOE-UCLA)Q99447
IntAct (EBI)Q99447
FunCoupENSG00000185813
BioGRIDPCYT2
STRING (EMBL)PCYT2
ZODIACPCYT2
Ontologies - Pathways
QuickGOQ99447
Ontology : AmiGOethanolamine-phosphate cytidylyltransferase activity  cellular_component  endoplasmic reticulum membrane  phosphatidylethanolamine biosynthetic process  phosphatidylethanolamine biosynthetic process  phospholipid biosynthetic process  
Ontology : EGO-EBIethanolamine-phosphate cytidylyltransferase activity  cellular_component  endoplasmic reticulum membrane  phosphatidylethanolamine biosynthetic process  phosphatidylethanolamine biosynthetic process  phospholipid biosynthetic process  
Pathways : KEGGGlycerophospholipid metabolism   
NDEx NetworkPCYT2
Atlas of Cancer Signalling NetworkPCYT2
Wikipedia pathwaysPCYT2
Orthology - Evolution
OrthoDB5833
GeneTree (enSembl)ENSG00000185813
Phylogenetic Trees/Animal Genes : TreeFamPCYT2
HOVERGENQ99447
HOGENOMQ99447
Homologs : HomoloGenePCYT2
Homology/Alignments : Family Browser (UCSC)PCYT2
Gene fusions - Rearrangements
Fusion : MitelmanSRCIN1/PCYT2 [17q12/17q25.3]  [t(17;17)(q12;q25)]  
Fusion: TCGASRCIN1 17q12 PCYT2 17q25.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCYT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCYT2
dbVarPCYT2
ClinVarPCYT2
1000_GenomesPCYT2 
Exome Variant ServerPCYT2
ExAC (Exome Aggregation Consortium)PCYT2 (select the gene name)
Genetic variants : HAPMAP5833
Genomic Variants (DGV)PCYT2 [DGVbeta]
DECIPHERPCYT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCYT2 
Mutations
ICGC Data PortalPCYT2 
TCGA Data PortalPCYT2 
Broad Tumor PortalPCYT2
OASIS PortalPCYT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCYT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCYT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCYT2
DgiDB (Drug Gene Interaction Database)PCYT2
DoCM (Curated mutations)PCYT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCYT2 (select a term)
intoGenPCYT2
Cancer3DPCYT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602679   
Orphanet
MedgenPCYT2
Genetic Testing Registry PCYT2
NextProtQ99447 [Medical]
TSGene5833
GENETestsPCYT2
Target ValidationPCYT2
Huge Navigator PCYT2 [HugePedia]
snp3D : Map Gene to Disease5833
BioCentury BCIQPCYT2
ClinGenPCYT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5833
Chemical/Pharm GKB GenePA33101
Clinical trialPCYT2
Miscellaneous
canSAR (ICR)PCYT2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCYT2
EVEXPCYT2
GoPubMedPCYT2
iHOPPCYT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:10:16 CEST 2017

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