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PDAP1 (PDGFA associated protein 1)

Identity

Alias_symbol (synonym)PAP1
PAP
HASPP28
Other alias
HGNC (Hugo) PDAP1
LocusID (NCBI) 11333
Atlas_Id 53764
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99394676 and ends at 99408682 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARPC1B (7q22.1) / PDAP1 (7q22.1)PDAP1 (7q22.1) / CTDSP2 (12q14.1)PDAP1 (7q22.1) / SEL1L2 (20p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDAP1   14634
Cards
Entrez_Gene (NCBI)PDAP1  11333  PDGFA associated protein 1
AliasesHASPP28; PAP; PAP1
GeneCards (Weizmann)PDAP1
Ensembl hg19 (Hinxton)ENSG00000106244 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106244 [Gene_View]  chr7:99394676-99408682 [Contig_View]  PDAP1 [Vega]
ICGC DataPortalENSG00000106244
TCGA cBioPortalPDAP1
AceView (NCBI)PDAP1
Genatlas (Paris)PDAP1
WikiGenes11333
SOURCE (Princeton)PDAP1
Genetics Home Reference (NIH)PDAP1
Genomic and cartography
GoldenPath hg38 (UCSC)PDAP1  -     chr7:99394676-99408682 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDAP1  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblPDAP1 - 7q22.1 [CytoView hg19]  PDAP1 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIPDAP1 [Mapview hg19]  PDAP1 [Mapview hg38]
OMIM607075   
Gene and transcription
Genbank (Entrez)AA464753 BC000684 BC001578 BC007873 BC039130
RefSeq transcript (Entrez)NM_014891
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDAP1
Cluster EST : UnigeneHs.632296 [ NCBI ]
CGAP (NCI)Hs.632296
Alternative Splicing GalleryENSG00000106244
Gene ExpressionPDAP1 [ NCBI-GEO ]   PDAP1 [ EBI - ARRAY_EXPRESS ]   PDAP1 [ SEEK ]   PDAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)PDAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11333
GTEX Portal (Tissue expression)PDAP1
Human Protein AtlasENSG00000106244-PDAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13442   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13442  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13442
Splice isoforms : SwissVarQ13442
PhosPhoSitePlusQ13442
Domains : Interpro (EBI)Casein_kinase_sb_PP28   
Domain families : Pfam (Sanger)PP28 (PF10252)   
Domain families : Pfam (NCBI)pfam10252   
Conserved Domain (NCBI)PDAP1
DMDM Disease mutations11333
Blocks (Seattle)PDAP1
SuperfamilyQ13442
Human Protein Atlas [tissue]ENSG00000106244-PDAP1 [tissue]
Peptide AtlasQ13442
HPRD06149
IPIIPI00013297   IPI00926884   
Protein Interaction databases
DIP (DOE-UCLA)Q13442
IntAct (EBI)Q13442
FunCoupENSG00000106244
BioGRIDPDAP1
STRING (EMBL)PDAP1
ZODIACPDAP1
Ontologies - Pathways
QuickGOQ13442
Ontology : AmiGORNA binding  extracellular region  signal transduction  cell proliferation  neutrophil degranulation  ficolin-1-rich granule lumen  
Ontology : EGO-EBIRNA binding  extracellular region  signal transduction  cell proliferation  neutrophil degranulation  ficolin-1-rich granule lumen  
NDEx NetworkPDAP1
Atlas of Cancer Signalling NetworkPDAP1
Wikipedia pathwaysPDAP1
Orthology - Evolution
OrthoDB11333
GeneTree (enSembl)ENSG00000106244
Phylogenetic Trees/Animal Genes : TreeFamPDAP1
HOVERGENQ13442
HOGENOMQ13442
Homologs : HomoloGenePDAP1
Homology/Alignments : Family Browser (UCSC)PDAP1
Gene fusions - Rearrangements
Tumor Fusion PortalPDAP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDAP1
dbVarPDAP1
ClinVarPDAP1
1000_GenomesPDAP1 
Exome Variant ServerPDAP1
ExAC (Exome Aggregation Consortium)ENSG00000106244
GNOMAD BrowserENSG00000106244
Genetic variants : HAPMAP11333
Genomic Variants (DGV)PDAP1 [DGVbeta]
DECIPHERPDAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDAP1 
Mutations
ICGC Data PortalPDAP1 
TCGA Data PortalPDAP1 
Broad Tumor PortalPDAP1
OASIS PortalPDAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDAP1
DgiDB (Drug Gene Interaction Database)PDAP1
DoCM (Curated mutations)PDAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDAP1 (select a term)
intoGenPDAP1
Cancer3DPDAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607075   
Orphanet
DisGeNETPDAP1
MedgenPDAP1
Genetic Testing Registry PDAP1
NextProtQ13442 [Medical]
TSGene11333
GENETestsPDAP1
Target ValidationPDAP1
Huge Navigator PDAP1 [HugePedia]
snp3D : Map Gene to Disease11333
BioCentury BCIQPDAP1
ClinGenPDAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11333
Chemical/Pharm GKB GenePA33102
Clinical trialPDAP1
Miscellaneous
canSAR (ICR)PDAP1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDAP1
EVEXPDAP1
GoPubMedPDAP1
iHOPPDAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:28:08 CET 2017

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