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PDCD10 (programmed cell death 10)

Identity

Other namesCCM3
TFAR15
HGNC (Hugo) PDCD10
LocusID (NCBI) 11235
Location 3q26.1
Location_base_pair Starts at 167401695 and ends at 167452594 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PDCD10   8761
Cards
Entrez_Gene (NCBI)PDCD10  11235  programmed cell death 10
GeneCards (Weizmann)PDCD10
Ensembl (Hinxton)ENSG00000114209 [Gene_View]  chr3:167401695-167452594 [Contig_View]  PDCD10 [Vega]
ICGC DataPortalENSG00000114209
cBioPortalPDCD10
AceView (NCBI)PDCD10
Genatlas (Paris)PDCD10
WikiGenes11235
SOURCE (Princeton)NM_007217 NM_145859 NM_145860
Genomic and cartography
GoldenPath (UCSC)PDCD10  -  3q26.1   chr3:167401695-167452594 -  3q26.1   [Description]    (hg19-Feb_2009)
EnsemblPDCD10 - 3q26.1 [CytoView]
Mapping of homologs : NCBIPDCD10 [Mapview]
OMIM603285   609118   
Gene and transcription
Genbank (Entrez)AF022385 AK291130 BC002506 BC016353 CR457107
RefSeq transcript (Entrez)NM_007217 NM_145859 NM_145860
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NG_008158 NT_005612 NW_001838884 NW_004929311
Consensus coding sequences : CCDS (NCBI)PDCD10
Cluster EST : UnigeneHs.478150 [ NCBI ]
CGAP (NCI)Hs.478150
Alternative Splicing : Fast-db (Paris)GSHG0022212
Alternative Splicing GalleryENSG00000114209
Gene ExpressionPDCD10 [ NCBI-GEO ]     PDCD10 [ SEEK ]   PDCD10 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUL8 (Uniprot)
NextProtQ9BUL8  [Medical]
With graphics : InterProQ9BUL8
Splice isoforms : SwissVarQ9BUL8 (Swissvar)
Domains : Interpro (EBI)DUF1241 [organisation]  
Related proteins : CluSTrQ9BUL8
Domain families : Pfam (Sanger)DUF1241 (PF06840)   
Domain families : Pfam (NCBI)pfam06840   
DMDM Disease mutations11235
Blocks (Seattle)Q9BUL8
PDB (SRS)3AJM    3L8I    3L8J    3RQE    3RQF    3RQG    3W8H    3W8I    4GEH   
PDB (PDBSum)3AJM    3L8I    3L8J    3RQE    3RQF    3RQG    3W8H    3W8I    4GEH   
PDB (IMB)3AJM    3L8I    3L8J    3RQE    3RQF    3RQG    3W8H    3W8I    4GEH   
PDB (RSDB)3AJM    3L8I    3L8J    3RQE    3RQF    3RQG    3W8H    3W8I    4GEH   
Human Protein AtlasENSG00000114209 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9BUL8
HPRD10141
IPIIPI00298558   IPI00793567   IPI00945696   IPI00790953   IPI00792092   IPI00947286   IPI00946434   IPI00791474   IPI00793671   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUL8
IntAct (EBI)Q9BUL8
FunCoupENSG00000114209
BioGRIDPDCD10
InParanoidQ9BUL8
Interologous Interaction database Q9BUL8
IntegromeDBPDCD10
STRING (EMBL)PDCD10
Ontologies - Pathways
Ontology : AmiGOGolgi membrane  angiogenesis  protein binding  cytosol  plasma membrane  apoptotic process  positive regulation of cell proliferation  protein homodimerization activity  negative regulation of apoptotic process  positive regulation of MAP kinase activity  protein N-terminus binding  extracellular vesicular exosome  
Ontology : EGO-EBIGolgi membrane  angiogenesis  protein binding  cytosol  plasma membrane  apoptotic process  positive regulation of cell proliferation  protein homodimerization activity  negative regulation of apoptotic process  positive regulation of MAP kinase activity  protein N-terminus binding  extracellular vesicular exosome  
Protein Interaction DatabasePDCD10
Wikipedia pathwaysPDCD10
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PDCD10
snp3D : Map Gene to Disease11235
SNP (GeneSNP Utah)PDCD10
SNP : HGBasePDCD10
Genetic variants : HAPMAPPDCD10
Exome VariantPDCD10
1000_GenomesPDCD10 
ICGC programENSG00000114209 
Somatic Mutations in Cancer : COSMICPDCD10 
CONAN: Copy Number AnalysisPDCD10 
Mutations and Diseases : HGMDPDCD10
Mutations and Diseases : intOGenPDCD10
Genomic VariantsPDCD10  PDCD10 [DGVbeta]
dbVarPDCD10
ClinVarPDCD10
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM603285    609118   
MedgenPDCD10
GENETestsPDCD10
Disease Genetic AssociationPDCD10
Huge Navigator PDCD10 [HugePedia]  PDCD10 [HugeCancerGEM]
General knowledge
Homologs : HomoloGenePDCD10
Homology/Alignments : Family Browser (UCSC)PDCD10
Phylogenetic Trees/Animal Genes : TreeFamPDCD10
Chemical/Protein Interactions : CTD11235
Chemical/Pharm GKB GenePA33111
Clinical trialPDCD10
Cancer Resource (Charite)ENSG00000114209
Other databases
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
CoreMinePDCD10
iHOPPDCD10
OncoSearchPDCD10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:09:42 CEST 2014

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