Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PDCD11 (programmed cell death 11)

Identity

Other namesALG-4
ALG4
NFBP
RRP5
HGNC (Hugo) PDCD11
LocusID (NCBI) 22984
Location 10q24.33
Location_base_pair Starts at 105156412 and ends at 105206019 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PDCD11   13408
Cards
Entrez_Gene (NCBI)PDCD11  22984  programmed cell death 11
GeneCards (Weizmann)PDCD11
Ensembl hg19 (Hinxton)ENSG00000148843 [Gene_View]  chr10:105156412-105206019 [Contig_View]  PDCD11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000148843 [Gene_View]  chr10:105156412-105206019 [Contig_View]  PDCD11 [Vega]
ICGC DataPortalENSG00000148843
cBioPortalPDCD11
AceView (NCBI)PDCD11
Genatlas (Paris)PDCD11
WikiGenes22984
SOURCE (Princeton)PDCD11
Genomic and cartography
GoldenPath hg19 (UCSC)PDCD11  -     chr10:105156412-105206019 +  10q24.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PDCD11  -     10q24.33   [Description]    (hg38-Dec_2013)
EnsemblPDCD11 - 10q24.33 [CytoView hg19]  PDCD11 - 10q24.33 [CytoView hg38]
Mapping of homologs : NCBIPDCD11 [Mapview hg19]  PDCD11 [Mapview hg38]
OMIM612333   
Gene and transcription
Genbank (Entrez)AK294971 AK307418 BC007698 BC023615 BC049838
RefSeq transcript (Entrez)NM_014976
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NT_030059 NW_001838006 NW_004929376
Consensus coding sequences : CCDS (NCBI)PDCD11
Cluster EST : UnigeneHs.239499 [ NCBI ]
CGAP (NCI)Hs.239499
Alternative Splicing : Fast-db (Paris)GSHG0003661
Alternative Splicing GalleryENSG00000148843
Gene ExpressionPDCD11 [ NCBI-GEO ]     PDCD11 [ SEEK ]   PDCD11 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14690 (Uniprot)
NextProtQ14690  [Medical]
With graphics : InterProQ14690
Splice isoforms : SwissVarQ14690 (Swissvar)
Domaine pattern : Prosite (Expaxy)S1 (PS50126)   
Domains : Interpro (EBI)HAT    NA-bd_OB-fold    Rbsml_prot_S1_RNA-bd_dom    RNA-binding_domain_S1    Suf    TPR-contain_dom    TPR-like_helical   
Related proteins : CluSTrQ14690
Domain families : Pfam (Sanger)S1 (PF00575)    Suf (PF05843)   
Domain families : Pfam (NCBI)pfam00575    pfam05843   
Domain families : Smart (EMBL)HAT (SM00386)  S1 (SM00316)  
DMDM Disease mutations22984
Blocks (Seattle)Q14690
PDB (SRS)1WI5   
PDB (PDBSum)1WI5   
PDB (IMB)1WI5   
PDB (RSDB)1WI5   
Human Protein AtlasENSG00000148843
Peptide AtlasQ14690
HPRD18752
IPIIPI00400922   IPI01011284   
Protein Interaction databases
DIP (DOE-UCLA)Q14690
IntAct (EBI)Q14690
FunCoupENSG00000148843
BioGRIDPDCD11
IntegromeDBPDCD11
STRING (EMBL)PDCD11
Ontologies - Pathways
QuickGOQ14690
Ontology : AmiGOprotein binding  nucleus  nucleolus  cytosol  rRNA processing  mRNA processing  transcription factor binding  poly(A) RNA binding  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  cytosol  rRNA processing  mRNA processing  transcription factor binding  poly(A) RNA binding  
Protein Interaction DatabasePDCD11
DoCM (Curated mutations)PDCD11
Wikipedia pathwaysPDCD11
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerPDCD11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDCD11
dbVarPDCD11
ClinVarPDCD11
1000_GenomesPDCD11 
Exome Variant ServerPDCD11
SNP (GeneSNP Utah)PDCD11
SNP : HGBasePDCD11
Genetic variants : HAPMAPPDCD11
Genomic VariantsPDCD11  PDCD11 [DGVbeta]
Mutations
ICGC Data PortalENSG00000148843 
Somatic Mutations in Cancer : COSMICPDCD11 
CONAN: Copy Number AnalysisPDCD11 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)10:105156412-105206019
Mutations and Diseases : HGMDPDCD11
OMIM612333   
MedgenPDCD11
NextProtQ14690 [Medical]
GENETestsPDCD11
Disease Genetic AssociationPDCD11
Huge Navigator PDCD11 [HugePedia]  PDCD11 [HugeCancerGEM]
snp3D : Map Gene to Disease22984
DGIdb (Drug Gene Interaction db)PDCD11
General knowledge
Homologs : HomoloGenePDCD11
Homology/Alignments : Family Browser (UCSC)PDCD11
Phylogenetic Trees/Animal Genes : TreeFamPDCD11
Chemical/Protein Interactions : CTD22984
Chemical/Pharm GKB GenePA134909758
Clinical trialPDCD11
Cancer Resource (Charite)ENSG00000148843
Other databases
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
CoreMinePDCD11
GoPubMedPDCD11
iHOPPDCD11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 00:45:48 CET 2014
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