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PDCD11 (programmed cell death 11)

Identity

Other namesALG-4
ALG4
NFBP
RRP5
HGNC (Hugo) PDCD11
LocusID (NCBI) 22984
Location 10q24.33
Location_base_pair Starts at 105156412 and ends at 105206019 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PDCD11   13408
Entrez_Gene (NCBI)PDCD11  22984  programmed cell death 11
Cards
GeneCards (Weizmann)PDCD11
Ensembl (Hinxton)ENSG00000148843 [Gene_View]  chr10:105156412-105206019 [Contig_View]  PDCD11 [Vega]
AceView (NCBI)PDCD11
Genatlas (Paris)PDCD11
SOURCE (Stanford)NM_014976
Genomic and cartography
GoldenPath (UCSC)PDCD11  -  10q24.33   chr10:105156412-105206019 +  10q24.33   [Description]    (hg19-Feb_2009)
EnsemblPDCD11 - 10q24.33 [CytoView]
Mapping of homologs : NCBIPDCD11 [Mapview]
OMIM612333   
Gene and transcription
Genbank (Entrez)AK294971 AK307418 BC007698 BC023615 BC049838
RefSeq transcript (SRS)NM_014976
RefSeq transcript (Entrez)NM_014976
RefSeq genomic (SRS)AC_000142 NC_000010 NC_018921 NT_030059 NW_001838006 NW_004929376
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NT_030059 NW_001838006 NW_004929376
Consensus coding sequences : CCDS (NCBI)PDCD11
Cluster EST : UnigeneHs.239499 [ SRS ] Hs.239499 [ NCBI ]
CGAP (NCI)Hs.239499
Alternative Splicing : Fast-db (Paris)GSHG0003661
Alternative Splicing GalleryENSG00000148843
Gene ExpressionPDCD11 [ NCBI-GEO ]   PDCD11 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14690 (SRS) Q14690 (Uniprot)
NextProtQ14690  [Medical]
With graphics : InterProQ14690
Splice isoforms : SwissVarQ14690(Swissvar)
Domaine pattern : Prosite (SRS)S1 (PS50126)   
Domaine pattern : Prosite (Expaxy)S1 (PS50126)   
Domains : Interpro (SRS)HAT    NA-bd_OB-fold    Rbsml_prot_S1_RNA-bd_dom    RNA-binding_domain_S1    Suf    TPR-contain_dom    TPR-like_helical   
Domains : Interpro (EBI)HAT    NA-bd_OB-fold    Rbsml_prot_S1_RNA-bd_dom    RNA-binding_domain_S1    Suf    TPR-contain_dom    TPR-like_helical   
Related proteins : CluSTrQ14690
Domain families : Pfam (SRS)S1 (PF00575)    Suf (PF05843)   
Domain families : Pfam (Sanger)S1 (PF00575)    Suf (PF05843)   
Domain families : Pfam (NCBI)pfam00575    pfam05843   
Domain families : Smart (EMBL)HAT (SM00386)  S1 (SM00316)  
DMDM22984
Blocks (Seattle)Q14690
PDB (SRS)1WI5   
PDB (PDBSum)1WI5   
PDB (IMB)1WI5   
PDB (RSDB)1WI5   
Human Protein AtlasENSG00000148843
HPRD18752
IPIIPI00400922   IPI01011284   
Protein Interaction databases
DIP (DOE-UCLA)Q14690
IntAct (EBI)Q14690
FunCoupENSG00000148843
REACTOMEPDCD11
Protein Interaction Database22984
BioGRIDPDCD11
InParanoidQ14690
Interologous Interaction database Q14690
IntegromeDBPDCD11
Gene fusion - rearrangments
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PDCD11
SNP (GeneSNP Utah)PDCD11
SNP : HGBasePDCD11
Genetic variants : HAPMAPPDCD11
Somatic Mutations in Cancer : COSMICPDCD11 
CONAN: Copy Number AnalysisPDCD11 
Mutations and Diseases : HGMDPDCD11
OMIM612333   
GENETests612333   
Disease Genetic AssociationPDCD11
Huge Navigator PDCD11 [HugePedia]  PDCD11 [HugeCancerGEM]
Genomic VariantsPDCD11  PDCD11 [DGVbeta]
ClinVarPDCD11
snp3D : Map Gene to Disease22984
General knowledge
Homologs : HomoloGenePDCD11
Homology/Alignments : Family Browser (UCSC)PDCD11
Phylogenetic Trees/Animal Genes : TreeFamPDCD11
Chemical/Protein Interactions : CTD22984
Chemical/Pharm GKB GenePA134909758
Clinical trialPDCD11
Cancer Resource (Charite)ENSG00000148843
Ontology : AmiGORNA binding  protein binding  nucleus  nucleolus  cytosol  rRNA processing  mRNA processing  transcription factor binding  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleolus  cytosol  rRNA processing  mRNA processing  transcription factor binding  
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
PubGenePDCD11
iHOPPDCD11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Dec 3 19:43:46 CET 2013
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