| Nomenclature |
|---|
| HGNC (Hugo) | PDCD11 13408 |
| Cards |
|---|
| Entrez_Gene (NCBI) | PDCD11 22984 programmed cell death 11 |
| Aliases | ALG-4; ALG4; NFBP; RRP5 |
| GeneCards (Weizmann) | PDCD11 |
| Ensembl hg19 (Hinxton) | ENSG00000148843 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000148843 [Gene_View] chr10:103396655-103446262 [Contig_View] PDCD11 [Vega] |
| ICGC DataPortal | ENSG00000148843 |
| TCGA cBioPortal | PDCD11 |
| AceView (NCBI) | PDCD11 |
| Genatlas (Paris) | PDCD11 |
| WikiGenes | 22984 |
| SOURCE (Princeton) | PDCD11 |
| Genetics Home Reference (NIH) | PDCD11 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | PDCD11 - chr10:103396655-103446262 + 10q24.33 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | PDCD11 - 10q24.33 [Description] (hg19-Feb_2009) |
| Ensembl | PDCD11 - 10q24.33 [CytoView hg19] PDCD11 - 10q24.33 [CytoView hg38] |
| Mapping of homologs : NCBI | PDCD11 [Mapview hg19] PDCD11 [Mapview hg38] |
| OMIM | 612333 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AK294971 AK307418 BC007698 BC023615 BC049838 |
| RefSeq transcript (Entrez) | NM_014976 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | PDCD11 |
| Cluster EST : Unigene | Hs.239499 [ NCBI ] |
| CGAP (NCI) | Hs.239499 |
| Alternative Splicing Gallery | ENSG00000148843 |
| Gene Expression | PDCD11 [ NCBI-GEO ] PDCD11 [ EBI - ARRAY_EXPRESS ]
PDCD11 [ SEEK ] PDCD11 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | PDCD11 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 22984 |
| GTEX Portal (Tissue expression) | PDCD11 |
| Human Protein Atlas | ENSG00000148843-PDCD11 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q14690 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q14690 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q14690 |
| Splice isoforms : SwissVar | Q14690 |
| PhosPhoSitePlus | Q14690 |
| Domaine pattern : Prosite (Expaxy) | S1 (PS50126) |
| Domains : Interpro (EBI) | HAT NA-bd_OB-fold S1_dom S1_domain Suf TPR-contain_dom TPR-like_helical_dom |
| Domain families : Pfam (Sanger) | S1 (PF00575) Suf (PF05843) |
| Domain families : Pfam (NCBI) | pfam00575 pfam05843 |
| Domain families : Smart (EMBL) | HAT (SM00386) S1 (SM00316) |
| Conserved Domain (NCBI) | PDCD11 |
| DMDM Disease mutations | 22984 |
| Blocks (Seattle) | PDCD11 |
| PDB (SRS) | 1WI5 |
| PDB (PDBSum) | 1WI5 |
| PDB (IMB) | 1WI5 |
| PDB (RSDB) | 1WI5 |
| Structural Biology KnowledgeBase | 1WI5 |
| SCOP (Structural Classification of Proteins) | 1WI5 |
| CATH (Classification of proteins structures) | 1WI5 |
| Superfamily | Q14690 |
| Human Protein Atlas [tissue] | ENSG00000148843-PDCD11 [tissue] |
| Peptide Atlas | Q14690 |
| HPRD | 18752 |
| IPI | IPI00400922 IPI01011284 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q14690 |
| IntAct (EBI) | Q14690 |
| FunCoup | ENSG00000148843 |
| BioGRID | PDCD11 |
| STRING (EMBL) | PDCD11 |
| ZODIAC | PDCD11 |
| Ontologies - Pathways |
|---|
| QuickGO | Q14690 |
| Ontology : AmiGO | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) RNA binding RNA binding protein binding nucleus nucleoplasm nucleolus cytosol rRNA processing mRNA processing transcription factor binding small-subunit processome |
| Ontology : EGO-EBI | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) RNA binding RNA binding protein binding nucleus nucleoplasm nucleolus cytosol rRNA processing mRNA processing transcription factor binding small-subunit processome |
| NDEx Network | PDCD11 |
| Atlas of Cancer Signalling Network | PDCD11 |
| Wikipedia pathways | PDCD11 |
| Orthology - Evolution |
|---|
| OrthoDB | 22984 |
| GeneTree (enSembl) | ENSG00000148843 |
| Phylogenetic Trees/Animal Genes : TreeFam | PDCD11 |
| HOVERGEN | Q14690 |
| HOGENOM | Q14690 |
| Homologs : HomoloGene | PDCD11 |
| Homology/Alignments : Family Browser (UCSC) | PDCD11 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Mitelman | ARHGAP21/PDCD11 [10p12.1/10q24.33] [t(10;10)(p12;q24)] |
| Fusion : Mitelman | NEURL1/PDCD11 [10q24.33/10q24.33] [t(10;10)(q24;q24)] |
| Fusion: TCGA_MDACC | ARHGAP21 10p12.1 PDCD11 10q24.33 PRAD |
| Fusion: TCGA_MDACC | NEURL PDCD11 10q24.33 LUSC |
| Fusion Portal | ARHGAP21 10p12.1 PDCD11 10q24.33 PRAD |
| Fusion Portal | NEURL PDCD11 10q24.33 LUSC |
| Fusion : Quiver | PDCD11 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | PDCD11 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | PDCD11 |
| dbVar | PDCD11 |
| ClinVar | PDCD11 |
| 1000_Genomes | PDCD11 |
| Exome Variant Server | PDCD11 |
| ExAC (Exome Aggregation Consortium) | ENSG00000148843 |
| GNOMAD Browser | ENSG00000148843 |
| Genetic variants : HAPMAP | 22984 |
| Genomic Variants (DGV) | PDCD11 [DGVbeta] |
| DECIPHER | PDCD11 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | PDCD11 |
| Mutations |
|---|
| ICGC Data Portal | PDCD11 |
| TCGA Data Portal | PDCD11 |
| Broad Tumor Portal | PDCD11 |
| OASIS Portal | PDCD11 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | PDCD11 [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | PDCD11 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search PDCD11 |
| DgiDB (Drug Gene Interaction Database) | PDCD11 |
| DoCM (Curated mutations) | PDCD11 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | PDCD11 (select a term) |
| intoGen | PDCD11 |
| Cancer3D | PDCD11(select the gene name) |
| Impact of mutations | [PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 612333 |
| Orphanet | |
| DisGeNET | PDCD11 |
| Medgen | PDCD11 |
| Genetic Testing Registry | PDCD11
|
| NextProt | Q14690 [Medical] |
| TSGene | 22984 |
| GENETests | PDCD11 |
| Target Validation | PDCD11 |
| Huge Navigator |
PDCD11 [HugePedia] |
| snp3D : Map Gene to Disease | 22984 |
| BioCentury BCIQ | PDCD11 |
| ClinGen | PDCD11 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 22984 |
| Chemical/Pharm GKB Gene | PA134909758 |
| Clinical trial | PDCD11 |
| Miscellaneous |
|---|
| canSAR (ICR) | PDCD11 (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 33 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | PDCD11 |
| EVEX | PDCD11 |
| GoPubMed | PDCD11 |
| iHOP | PDCD11 |
