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PDCD1LG2 (programmed cell death 1 ligand 2)

Identity

Other namesB7DC
Btdc
CD273
PD-L2
PDCD1L2
PDL2
bA574F11.2
HGNC (Hugo) PDCD1LG2
LocusID (NCBI) 80380
Location 9p24.1
Location_base_pair Starts at 5510545 and ends at 5571282 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PDCD1LG2   18731
Entrez_Gene (NCBI)PDCD1LG2  80380  programmed cell death 1 ligand 2
Cards
GeneCards (Weizmann)PDCD1LG2
Ensembl (Hinxton)ENSG00000197646 [Gene_View]  chr9:5510545-5571282 [Contig_View]  PDCD1LG2 [Vega]
AceView (NCBI)PDCD1LG2
Genatlas (Paris)PDCD1LG2
SOURCE (Stanford)NM_025239
Genomic and cartography
GoldenPath (UCSC)PDCD1LG2  -  9p24.1   chr9:5510545-5571282 +  9p24.1   [Description]    (hg19-Feb_2009)
EnsemblPDCD1LG2 - 9p24.1 [CytoView]
Mapping of homologs : NCBIPDCD1LG2 [Mapview]
OMIM605723   
Gene and transcription
Genbank (Entrez)AF329193 AF344424 AK001872 AY254343 AY271901
RefSeq transcript (SRS)NM_025239
RefSeq transcript (Entrez)NM_025239
RefSeq genomic (SRS)AC_000141 NC_000009 NC_018920 NT_008413 NW_001839149 NW_004078038
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NT_008413 NW_001839149 NW_004078038
Consensus coding sequences : CCDS (NCBI)PDCD1LG2
Cluster EST : UnigeneHs.617872 [ SRS ] Hs.617872 [ NCBI ]
CGAP (NCI)Hs.617872
Alternative Splicing : Fast-db (Paris)GSHG0030005
Alternative Splicing GalleryENSG00000197646
Gene ExpressionPDCD1LG2 [ NCBI-GEO ]   PDCD1LG2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ51 (SRS) Q9BQ51 (Uniprot)
NextProtQ9BQ51
With graphics : InterProQ9BQ51
Splice isoforms : SwissVarQ9BQ51(Swissvar)
Domaine pattern : Prosite (SRS)IG_LIKE (PS50835)   
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (SRS)Ig-like    Ig-like_fold    Ig_sub   
Domains : Interpro (EBI)Ig-like    Ig-like_fold    Ig_sub   
Related proteins : CluSTrQ9BQ51
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)IG (SM00409)  
DMDM80380
Blocks (Seattle)Q9BQ51
Human Protein AtlasENSG00000197646
HPRD16147
IPIIPI00414542   IPI00429366   IPI00429365   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ51
IntAct (EBI)Q9BQ51
FunCoupENSG00000197646
REACTOMEPDCD1LG2
Protein Interaction Database80380
BioGRIDPDCD1LG2
InParanoidQ9BQ51
Interologous Interaction database Q9BQ51
IntegromeDBPDCD1LG2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PDCD1LG2
SNP (GeneSNP Utah)PDCD1LG2
SNP : HGBasePDCD1LG2
Genetic variants : HAPMAPPDCD1LG2
Somatic Mutations in Cancer : COSMICPDCD1LG2 
CONAN: Copy Number AnalysisPDCD1LG2 
Mutations and Diseases : HGMDPDCD1LG2
OMIM605723   
GENETests605723   
Disease Genetic AssociationPDCD1LG2
Huge Navigator PDCD1LG2 [HugePedia]  PDCD1LG2 [HugeCancerGEM]
Genomic VariantsPDCD1LG2  PDCD1LG2 [DGVbeta]
snp3D : Map Gene to Disease80380
General knowledge
Homologs : HomoloGenePDCD1LG2
Homology/Alignments : Family Browser (UCSC)PDCD1LG2
Phylogenetic Trees/Animal Genes : TreeFamPDCD1LG2
Chemical/Protein Interactions : CTD80380
Chemical/Pharm GKB GenePA134891547
Clinical trialPDCD1LG2
Cancer Resource (Charite)ENSG00000197646
Ontology : AmiGOmolecular_function  extracellular region  plasma membrane  immune response  endomembrane system  integral to membrane  T cell costimulation  positive regulation of T cell proliferation  negative regulation of T cell proliferation  
Ontology : EGO-EBImolecular_function  extracellular region  plasma membrane  immune response  endomembrane system  integral to membrane  T cell costimulation  positive regulation of T cell proliferation  negative regulation of T cell proliferation  
Pathways : KEGGCell adhesion molecules (CAMs)
Other databases
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
PubGenePDCD1LG2
iHOPPDCD1LG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:48:52 CEST 2013
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