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PDCD2 (programmed cell death 2)

Identity

Other namesRP8
ZMYND7
HGNC (Hugo) PDCD2
LocusID (NCBI) 5134
Atlas_Id 41674
Location 6q27
Location_base_pair Starts at 170890835 and ends at 170893780 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PDCD2   8762
Cards
Entrez_Gene (NCBI)PDCD2  5134  programmed cell death 2
GeneCards (Weizmann)PDCD2
Ensembl hg19 (Hinxton)ENSG00000071994 [Gene_View]  chr6:170890835-170893780 [Contig_View]  PDCD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000071994 [Gene_View]  chr6:170890835-170893780 [Contig_View]  PDCD2 [Vega]
ICGC DataPortalENSG00000071994
TCGA cBioPortalPDCD2
AceView (NCBI)PDCD2
Genatlas (Paris)PDCD2
WikiGenes5134
SOURCE (Princeton)PDCD2
Genomic and cartography
GoldenPath hg19 (UCSC)PDCD2  -     chr6:170890835-170893780 -  6q27   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PDCD2  -     6q27   [Description]    (hg38-Dec_2013)
EnsemblPDCD2 - 6q27 [CytoView hg19]  PDCD2 - 6q27 [CytoView hg38]
Mapping of homologs : NCBIPDCD2 [Mapview hg19]  PDCD2 [Mapview hg38]
OMIM600866   
Gene and transcription
Genbank (Entrez)AJ420535 AK055180 AK297343 AW966881 AY948416
RefSeq transcript (Entrez)NM_001199461 NM_001199462 NM_001199463 NM_001199464 NM_002598 NM_144781
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_025741 NW_004929328
Consensus coding sequences : CCDS (NCBI)PDCD2
Cluster EST : UnigeneHs.367900 [ NCBI ]
CGAP (NCI)Hs.367900
Alternative Splicing : Fast-db (Paris)GSHG0027095
Alternative Splicing GalleryENSG00000071994
Gene ExpressionPDCD2 [ NCBI-GEO ]     PDCD2 [ SEEK ]   PDCD2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16342 (Uniprot)
NextProtQ16342  [Medical]
With graphics : InterProQ16342
Splice isoforms : SwissVarQ16342 (Swissvar)
Domaine pattern : Prosite (Expaxy)ZF_MYND_1 (PS01360)    ZF_MYND_2 (PS50865)   
Domains : Interpro (EBI)PDCD2_C    Znf_MYND   
Related proteins : CluSTrQ16342
Domain families : Pfam (Sanger)PDCD2_C (PF04194)    zf-MYND (PF01753)   
Domain families : Pfam (NCBI)pfam04194    pfam01753   
DMDM Disease mutations5134
Blocks (Seattle)Q16342
Human Protein AtlasENSG00000071994
Peptide AtlasQ16342
HPRD02922
IPIIPI00001427   IPI00432847   IPI00983454   IPI00376691   IPI01013394   IPI00749327   IPI01014185   IPI01013790   IPI01011731   IPI01011306   IPI00979289   IPI00982587   IPI01010512   
Protein Interaction databases
DIP (DOE-UCLA)Q16342
IntAct (EBI)Q16342
FunCoupENSG00000071994
BioGRIDPDCD2
IntegromeDBPDCD2
STRING (EMBL)PDCD2
Ontologies - Pathways
QuickGOQ16342
Ontology : AmiGODNA binding  protein binding  nucleus  cytoplasm  apoptotic process  activation of cysteine-type endopeptidase activity involved in apoptotic process  enzyme binding  positive regulation of apoptotic process  metal ion binding  extracellular exosome  regulation of hematopoietic progenitor cell differentiation  positive regulation of hematopoietic stem cell proliferation  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  cytoplasm  apoptotic process  activation of cysteine-type endopeptidase activity involved in apoptotic process  enzyme binding  positive regulation of apoptotic process  metal ion binding  extracellular exosome  regulation of hematopoietic progenitor cell differentiation  positive regulation of hematopoietic stem cell proliferation  
Protein Interaction DatabasePDCD2
DoCM (Curated mutations)PDCD2
Wikipedia pathwaysPDCD2
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerPDCD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDCD2
dbVarPDCD2
ClinVarPDCD2
1000_GenomesPDCD2 
Exome Variant ServerPDCD2
SNP (GeneSNP Utah)PDCD2
SNP : HGBasePDCD2
Genetic variants : HAPMAPPDCD2
Genomic Variants (DGV)PDCD2 [DGVbeta]
Mutations
ICGC Data PortalPDCD2 
TCGA Data PortalPDCD2 
Tumor PortalPDCD2
Somatic Mutations in Cancer : COSMICPDCD2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)6:170890835-170893780
CONAN: Copy Number AnalysisPDCD2 
Mutations and Diseases : HGMDPDCD2
OMIM600866   
MedgenPDCD2
NextProtQ16342 [Medical]
GENETestsPDCD2
Disease Genetic AssociationPDCD2
Huge Navigator PDCD2 [HugePedia]  PDCD2 [HugeCancerGEM]
snp3D : Map Gene to Disease5134
DGIdb (Drug Gene Interaction db)PDCD2
General knowledge
Homologs : HomoloGenePDCD2
Homology/Alignments : Family Browser (UCSC)PDCD2
Phylogenetic Trees/Animal Genes : TreeFamPDCD2
Chemical/Protein Interactions : CTD5134
Chemical/Pharm GKB GenePA33112
Clinical trialPDCD2
Cancer Resource (Charite)ENSG00000071994
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
CoreMinePDCD2
GoPubMedPDCD2
iHOPPDCD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Apr 13 14:58:00 CEST 2015

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