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PDCD2L (programmed cell death 2 like)

Identity

Alias_symbol (synonym)MGC13096
Other alias-
HGNC (Hugo) PDCD2L
LocusID (NCBI) 84306
Atlas_Id 53765
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 34404398 and ends at 34426167 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CENPV (17p11.2) / PDCD2L (19q13.11)UBA2 (19q13.11) / PDCD2L (19q13.11)UBA2 19q13.11 / PDCD2L 19q13.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDCD2L   28194
Cards
Entrez_Gene (NCBI)PDCD2L  84306  programmed cell death 2 like
Aliases
GeneCards (Weizmann)PDCD2L
Ensembl hg19 (Hinxton)ENSG00000126249 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126249 [Gene_View]  chr19:34404398-34426167 [Contig_View]  PDCD2L [Vega]
ICGC DataPortalENSG00000126249
TCGA cBioPortalPDCD2L
AceView (NCBI)PDCD2L
Genatlas (Paris)PDCD2L
WikiGenes84306
SOURCE (Princeton)PDCD2L
Genetics Home Reference (NIH)PDCD2L
Genomic and cartography
GoldenPath hg38 (UCSC)PDCD2L  -     chr19:34404398-34426167 +  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDCD2L  -     19q13.11   [Description]    (hg19-Feb_2009)
EnsemblPDCD2L - 19q13.11 [CytoView hg19]  PDCD2L - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBIPDCD2L [Mapview hg19]  PDCD2L [Mapview hg38]
OMIM615661   
Gene and transcription
Genbank (Entrez)BC006146 HQ448210
RefSeq transcript (Entrez)NM_032346
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDCD2L
Cluster EST : UnigeneHs.515344 [ NCBI ]
CGAP (NCI)Hs.515344
Alternative Splicing GalleryENSG00000126249
Gene ExpressionPDCD2L [ NCBI-GEO ]   PDCD2L [ EBI - ARRAY_EXPRESS ]   PDCD2L [ SEEK ]   PDCD2L [ MEM ]
Gene Expression Viewer (FireBrowse)PDCD2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84306
GTEX Portal (Tissue expression)PDCD2L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRP1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRP1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRP1
Splice isoforms : SwissVarQ9BRP1
PhosPhoSitePlusQ9BRP1
Domains : Interpro (EBI)PDCD2_C   
Domain families : Pfam (Sanger)PDCD2_C (PF04194)   
Domain families : Pfam (NCBI)pfam04194   
Conserved Domain (NCBI)PDCD2L
DMDM Disease mutations84306
Blocks (Seattle)PDCD2L
SuperfamilyQ9BRP1
Human Protein AtlasENSG00000126249
Peptide AtlasQ9BRP1
HPRD17480
IPIIPI00031647   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRP1
IntAct (EBI)Q9BRP1
FunCoupENSG00000126249
BioGRIDPDCD2L
STRING (EMBL)PDCD2L
ZODIACPDCD2L
Ontologies - Pathways
QuickGOQ9BRP1
Ontology : AmiGOcytoplasm  cell cycle  membrane  
Ontology : EGO-EBIcytoplasm  cell cycle  membrane  
NDEx NetworkPDCD2L
Atlas of Cancer Signalling NetworkPDCD2L
Wikipedia pathwaysPDCD2L
Orthology - Evolution
OrthoDB84306
GeneTree (enSembl)ENSG00000126249
Phylogenetic Trees/Animal Genes : TreeFamPDCD2L
HOVERGENQ9BRP1
HOGENOMQ9BRP1
Homologs : HomoloGenePDCD2L
Homology/Alignments : Family Browser (UCSC)PDCD2L
Gene fusions - Rearrangements
Fusion : MitelmanUBA2/PDCD2L [19q13.11/19q13.11]  [t(19;19)(q13;q13)]  
Fusion: TCGAUBA2 19q13.11 PDCD2L 19q13.11 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDCD2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDCD2L
dbVarPDCD2L
ClinVarPDCD2L
1000_GenomesPDCD2L 
Exome Variant ServerPDCD2L
ExAC (Exome Aggregation Consortium)PDCD2L (select the gene name)
Genetic variants : HAPMAP84306
Genomic Variants (DGV)PDCD2L [DGVbeta]
DECIPHERPDCD2L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDCD2L 
Mutations
ICGC Data PortalPDCD2L 
TCGA Data PortalPDCD2L 
Broad Tumor PortalPDCD2L
OASIS PortalPDCD2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDCD2L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDCD2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDCD2L
DgiDB (Drug Gene Interaction Database)PDCD2L
DoCM (Curated mutations)PDCD2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDCD2L (select a term)
intoGenPDCD2L
Cancer3DPDCD2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615661   
Orphanet
MedgenPDCD2L
Genetic Testing Registry PDCD2L
NextProtQ9BRP1 [Medical]
TSGene84306
GENETestsPDCD2L
Target ValidationPDCD2L
Huge Navigator PDCD2L [HugePedia]
snp3D : Map Gene to Disease84306
BioCentury BCIQPDCD2L
ClinGenPDCD2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84306
Chemical/Pharm GKB GenePA144596395
Clinical trialPDCD2L
Miscellaneous
canSAR (ICR)PDCD2L (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDCD2L
EVEXPDCD2L
GoPubMedPDCD2L
iHOPPDCD2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:02:54 CEST 2017

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