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PDCD6IPP2 (PDCD6IP pseudogene 2)

Identity

Other alias-
HGNC (Hugo) PDCD6IPP2
LocusID (NCBI) 646278
Atlas_Id 71783
Location 15q13.1  [Link to chromosome band 15q13]
Location_base_pair Starts at 28789834 and ends at 28856574 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(11;22)(q13;q13) HRASLS5/PHF21B
t(11;22)(q13;q13) HRASLS5/PHF21B


External links

Nomenclature
HGNC (Hugo)PDCD6IPP2   49873
Cards
Entrez_Gene (NCBI)PDCD6IPP2  646278  PDCD6IP pseudogene 2
Aliases
GeneCards (Weizmann)PDCD6IPP2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:28789834-28856574 [Contig_View]  PDCD6IPP2 [Vega]
TCGA cBioPortalPDCD6IPP2
AceView (NCBI)PDCD6IPP2
Genatlas (Paris)PDCD6IPP2
WikiGenes646278
SOURCE (Princeton)PDCD6IPP2
Genetics Home Reference (NIH)PDCD6IPP2
Genomic and cartography
GoldenPath hg38 (UCSC)PDCD6IPP2  -     chr15:28789834-28856574 +  15q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDCD6IPP2  -     15q13.1   [Description]    (hg19-Feb_2009)
EnsemblPDCD6IPP2 - 15q13.1 [CytoView hg19]  PDCD6IPP2 - 15q13.1 [CytoView hg38]
Mapping of homologs : NCBIPDCD6IPP2 [Mapview hg19]  PDCD6IPP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC018626 DB073810
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_187660 NW_011332701
Consensus coding sequences : CCDS (NCBI)PDCD6IPP2
Cluster EST : UnigeneHs.590143 [ NCBI ]
CGAP (NCI)Hs.590143
Gene ExpressionPDCD6IPP2 [ NCBI-GEO ]   PDCD6IPP2 [ EBI - ARRAY_EXPRESS ]   PDCD6IPP2 [ SEEK ]   PDCD6IPP2 [ MEM ]
Gene Expression Viewer (FireBrowse)PDCD6IPP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)646278
GTEX Portal (Tissue expression)PDCD6IPP2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PDCD6IPP2
DMDM Disease mutations646278
Blocks (Seattle)PDCD6IPP2
Protein Interaction databases
BioGRIDPDCD6IPP2
STRING (EMBL)PDCD6IPP2
ZODIACPDCD6IPP2
Ontologies - Pathways
Huge Navigator PDCD6IPP2 [HugePedia]
snp3D : Map Gene to Disease646278
BioCentury BCIQPDCD6IPP2
ClinGenPDCD6IPP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646278
Clinical trialPDCD6IPP2
Miscellaneous
canSAR (ICR)PDCD6IPP2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDCD6IPP2
EVEXPDCD6IPP2
GoPubMedPDCD6IPP2
iHOPPDCD6IPP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:22:07 CET 2017

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