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PDCD7 (programmed cell death 7)

Identity

Alias_symbol (synonym)HES18
ES18
Other alias
HGNC (Hugo) PDCD7
LocusID (NCBI) 10081
Atlas_Id 43404
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 65117379 and ends at 65133836 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PDCD7 (15q22.31) / CAPNS1 (19q13.12)PDCD7 (15q22.31) / KHDC1 (6q13)PDCD7 (15q22.31) / LOC390595 ()
UBTD2 (5q35.1) / PDCD7 (15q22.31)ZNF609 (15q22.31) / PDCD7 (15q22.31)ZNF609 15q22.31 / PDCD7 15q22.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDCD7   8767
Cards
Entrez_Gene (NCBI)PDCD7  10081  programmed cell death 7
AliasesES18; HES18
GeneCards (Weizmann)PDCD7
Ensembl hg19 (Hinxton)ENSG00000090470 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000090470 [Gene_View]  chr15:65117379-65133836 [Contig_View]  PDCD7 [Vega]
ICGC DataPortalENSG00000090470
TCGA cBioPortalPDCD7
AceView (NCBI)PDCD7
Genatlas (Paris)PDCD7
WikiGenes10081
SOURCE (Princeton)PDCD7
Genetics Home Reference (NIH)PDCD7
Genomic and cartography
GoldenPath hg38 (UCSC)PDCD7  -     chr15:65117379-65133836 -  15q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDCD7  -     15q22.31   [Description]    (hg19-Feb_2009)
EnsemblPDCD7 - 15q22.31 [CytoView hg19]  PDCD7 - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBIPDCD7 [Mapview hg19]  PDCD7 [Mapview hg38]
OMIM608138   
Gene and transcription
Genbank (Entrez)AF083930 AK096970 AK225816 AK303203 BC016992
RefSeq transcript (Entrez)NM_005707
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDCD7
Cluster EST : UnigeneHs.458596 [ NCBI ]
CGAP (NCI)Hs.458596
Alternative Splicing GalleryENSG00000090470
Gene ExpressionPDCD7 [ NCBI-GEO ]   PDCD7 [ EBI - ARRAY_EXPRESS ]   PDCD7 [ SEEK ]   PDCD7 [ MEM ]
Gene Expression Viewer (FireBrowse)PDCD7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10081
GTEX Portal (Tissue expression)PDCD7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8D1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8D1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8D1
Splice isoforms : SwissVarQ8N8D1
PhosPhoSitePlusQ8N8D1
Domains : Interpro (EBI)PDCD7   
Domain families : Pfam (Sanger)PDCD7 (PF16021)   
Domain families : Pfam (NCBI)pfam16021   
Conserved Domain (NCBI)PDCD7
DMDM Disease mutations10081
Blocks (Seattle)PDCD7
SuperfamilyQ8N8D1
Human Protein AtlasENSG00000090470
Peptide AtlasQ8N8D1
HPRD09736
IPIIPI00171186   IPI00916331   IPI00556161   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8D1
IntAct (EBI)Q8N8D1
FunCoupENSG00000090470
BioGRIDPDCD7
STRING (EMBL)PDCD7
ZODIACPDCD7
Ontologies - Pathways
QuickGOQ8N8D1
Ontology : AmiGOmRNA splicing, via spliceosome  nucleoplasm  U12-type spliceosomal complex  apoptotic process  RNA splicing  response to glucocorticoid  
Ontology : EGO-EBImRNA splicing, via spliceosome  nucleoplasm  U12-type spliceosomal complex  apoptotic process  RNA splicing  response to glucocorticoid  
NDEx NetworkPDCD7
Atlas of Cancer Signalling NetworkPDCD7
Wikipedia pathwaysPDCD7
Orthology - Evolution
OrthoDB10081
GeneTree (enSembl)ENSG00000090470
Phylogenetic Trees/Animal Genes : TreeFamPDCD7
HOVERGENQ8N8D1
HOGENOMQ8N8D1
Homologs : HomoloGenePDCD7
Homology/Alignments : Family Browser (UCSC)PDCD7
Gene fusions - Rearrangements
Fusion : MitelmanZNF609/PDCD7 [15q22.31/15q22.31]  [t(15;15)(q22;q22)]  
Fusion: TCGAZNF609 15q22.31 PDCD7 15q22.31 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDCD7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDCD7
dbVarPDCD7
ClinVarPDCD7
1000_GenomesPDCD7 
Exome Variant ServerPDCD7
ExAC (Exome Aggregation Consortium)PDCD7 (select the gene name)
Genetic variants : HAPMAP10081
Genomic Variants (DGV)PDCD7 [DGVbeta]
DECIPHERPDCD7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDCD7 
Mutations
ICGC Data PortalPDCD7 
TCGA Data PortalPDCD7 
Broad Tumor PortalPDCD7
OASIS PortalPDCD7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDCD7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDCD7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDCD7
DgiDB (Drug Gene Interaction Database)PDCD7
DoCM (Curated mutations)PDCD7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDCD7 (select a term)
intoGenPDCD7
Cancer3DPDCD7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608138   
Orphanet
MedgenPDCD7
Genetic Testing Registry PDCD7
NextProtQ8N8D1 [Medical]
TSGene10081
GENETestsPDCD7
Huge Navigator PDCD7 [HugePedia]
snp3D : Map Gene to Disease10081
BioCentury BCIQPDCD7
ClinGenPDCD7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10081
Chemical/Pharm GKB GenePA33117
Clinical trialPDCD7
Miscellaneous
canSAR (ICR)PDCD7 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDCD7
EVEXPDCD7
GoPubMedPDCD7
iHOPPDCD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri May 19 12:30:36 CEST 2017

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