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PDCL (phosducin like)

Identity

Alias_symbol (synonym)PhLP
DKFZp564M1863
Other alias
HGNC (Hugo) PDCL
LocusID (NCBI) 5082
Atlas_Id 71784
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 122818097 and ends at 122828656 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
INPP5B (1p34.3) / PDCL (9q33.2)PDCL (9q33.2) / ADH5 (4q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDCL   8770
Cards
Entrez_Gene (NCBI)PDCL  5082  phosducin like
AliasesPhLP
GeneCards (Weizmann)PDCL
Ensembl hg19 (Hinxton)ENSG00000136940 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136940 [Gene_View]  chr9:122818097-122828656 [Contig_View]  PDCL [Vega]
ICGC DataPortalENSG00000136940
TCGA cBioPortalPDCL
AceView (NCBI)PDCL
Genatlas (Paris)PDCL
WikiGenes5082
SOURCE (Princeton)PDCL
Genetics Home Reference (NIH)PDCL
Genomic and cartography
GoldenPath hg38 (UCSC)PDCL  -     chr9:122818097-122828656 -  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDCL  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblPDCL - 9q33.2 [CytoView hg19]  PDCL - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIPDCL [Mapview hg19]  PDCL [Mapview hg38]
OMIM604421   
Gene and transcription
Genbank (Entrez)AF031463 AK024980 AK313429 AL117602 AM393410
RefSeq transcript (Entrez)NM_005388
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDCL
Cluster EST : UnigeneHs.620774 [ NCBI ]
CGAP (NCI)Hs.620774
Alternative Splicing GalleryENSG00000136940
Gene ExpressionPDCL [ NCBI-GEO ]   PDCL [ EBI - ARRAY_EXPRESS ]   PDCL [ SEEK ]   PDCL [ MEM ]
Gene Expression Viewer (FireBrowse)PDCL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5082
GTEX Portal (Tissue expression)PDCL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13371   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13371  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13371
Splice isoforms : SwissVarQ13371
PhosPhoSitePlusQ13371
Domains : Interpro (EBI)Phosducin    Phosducin_N_dom    Phosducin_thioredoxin-like_dom    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)Phosducin (PF02114)   
Domain families : Pfam (NCBI)pfam02114   
Conserved Domain (NCBI)PDCL
DMDM Disease mutations5082
Blocks (Seattle)PDCL
SuperfamilyQ13371
Human Protein AtlasENSG00000136940
Peptide AtlasQ13371
HPRD05108
IPIIPI00298409   IPI00640799   IPI00639871   
Protein Interaction databases
DIP (DOE-UCLA)Q13371
IntAct (EBI)Q13371
FunCoupENSG00000136940
BioGRIDPDCL
STRING (EMBL)PDCL
ZODIACPDCL
Ontologies - Pathways
QuickGOQ13371
Ontology : AmiGOsignal transducer activity, downstream of receptor  protein binding  cytoplasm  cytoplasm  cytosol  protein folding  signal transduction  visual perception  regulation of G-protein coupled receptor protein signaling pathway  queuine tRNA-ribosyltransferase activity  queuosine biosynthetic process  protein complex binding  negative regulation of protein refolding  heterotrimeric G-protein complex assembly  
Ontology : EGO-EBIsignal transducer activity, downstream of receptor  protein binding  cytoplasm  cytoplasm  cytosol  protein folding  signal transduction  visual perception  regulation of G-protein coupled receptor protein signaling pathway  queuine tRNA-ribosyltransferase activity  queuosine biosynthetic process  protein complex binding  negative regulation of protein refolding  heterotrimeric G-protein complex assembly  
NDEx NetworkPDCL
Atlas of Cancer Signalling NetworkPDCL
Wikipedia pathwaysPDCL
Orthology - Evolution
OrthoDB5082
GeneTree (enSembl)ENSG00000136940
Phylogenetic Trees/Animal Genes : TreeFamPDCL
HOVERGENQ13371
HOGENOMQ13371
Homologs : HomoloGenePDCL
Homology/Alignments : Family Browser (UCSC)PDCL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDCL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDCL
dbVarPDCL
ClinVarPDCL
1000_GenomesPDCL 
Exome Variant ServerPDCL
ExAC (Exome Aggregation Consortium)PDCL (select the gene name)
Genetic variants : HAPMAP5082
Genomic Variants (DGV)PDCL [DGVbeta]
DECIPHERPDCL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDCL 
Mutations
ICGC Data PortalPDCL 
TCGA Data PortalPDCL 
Broad Tumor PortalPDCL
OASIS PortalPDCL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDCL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDCL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDCL
DgiDB (Drug Gene Interaction Database)PDCL
DoCM (Curated mutations)PDCL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDCL (select a term)
intoGenPDCL
Cancer3DPDCL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604421   
Orphanet
MedgenPDCL
Genetic Testing Registry PDCL
NextProtQ13371 [Medical]
TSGene5082
GENETestsPDCL
Target ValidationPDCL
Huge Navigator PDCL [HugePedia]
snp3D : Map Gene to Disease5082
BioCentury BCIQPDCL
ClinGenPDCL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5082
Chemical/Pharm GKB GenePA33119
Clinical trialPDCL
Miscellaneous
canSAR (ICR)PDCL (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDCL
EVEXPDCL
GoPubMedPDCL
iHOPPDCL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:14 CEST 2017

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