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PDCL2 (phosducin like 2)

Identity

Alias_symbol (synonym)GCPHLP
Other alias
HGNC (Hugo) PDCL2
LocusID (NCBI) 132954
Atlas_Id 71785
Location 4q12  [Link to chromosome band 4q12]
Location_base_pair Starts at 55556525 and ends at 55592212 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HOPX (4q12) / PDCL2 (4q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDCL2   29524
Cards
Entrez_Gene (NCBI)PDCL2  132954  phosducin like 2
AliasesGCPHLP
GeneCards (Weizmann)PDCL2
Ensembl hg19 (Hinxton)ENSG00000163440 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163440 [Gene_View]  chr4:55556525-55592212 [Contig_View]  PDCL2 [Vega]
ICGC DataPortalENSG00000163440
TCGA cBioPortalPDCL2
AceView (NCBI)PDCL2
Genatlas (Paris)PDCL2
WikiGenes132954
SOURCE (Princeton)PDCL2
Genetics Home Reference (NIH)PDCL2
Genomic and cartography
GoldenPath hg38 (UCSC)PDCL2  -     chr4:55556525-55592212 -  4q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDCL2  -     4q12   [Description]    (hg19-Feb_2009)
EnsemblPDCL2 - 4q12 [CytoView hg19]  PDCL2 - 4q12 [CytoView hg38]
Mapping of homologs : NCBIPDCL2 [Mapview hg19]  PDCL2 [Mapview hg38]
OMIM611676   
Gene and transcription
Genbank (Entrez)AW629089 BC034431 BG198696
RefSeq transcript (Entrez)NM_152401
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDCL2
Cluster EST : UnigeneHs.223712 [ NCBI ]
CGAP (NCI)Hs.223712
Alternative Splicing GalleryENSG00000163440
Gene ExpressionPDCL2 [ NCBI-GEO ]   PDCL2 [ EBI - ARRAY_EXPRESS ]   PDCL2 [ SEEK ]   PDCL2 [ MEM ]
Gene Expression Viewer (FireBrowse)PDCL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132954
GTEX Portal (Tissue expression)PDCL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4E4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4E4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4E4
Splice isoforms : SwissVarQ8N4E4
PhosPhoSitePlusQ8N4E4
Domains : Interpro (EBI)Phosducin_thioredoxin-like_dom    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)Phosducin (PF02114)   
Domain families : Pfam (NCBI)pfam02114   
Conserved Domain (NCBI)PDCL2
DMDM Disease mutations132954
Blocks (Seattle)PDCL2
PDB (SRS)3EVI   
PDB (PDBSum)3EVI   
PDB (IMB)3EVI   
PDB (RSDB)3EVI   
Structural Biology KnowledgeBase3EVI   
SCOP (Structural Classification of Proteins)3EVI   
CATH (Classification of proteins structures)3EVI   
SuperfamilyQ8N4E4
Human Protein AtlasENSG00000163440
Peptide AtlasQ8N4E4
HPRD15109
IPIIPI00166688   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4E4
IntAct (EBI)Q8N4E4
FunCoupENSG00000163440
BioGRIDPDCL2
STRING (EMBL)PDCL2
ZODIACPDCL2
Ontologies - Pathways
QuickGOQ8N4E4
Ontology : AmiGOcytoplasm  queuine tRNA-ribosyltransferase activity  queuosine biosynthetic process  
Ontology : EGO-EBIcytoplasm  queuine tRNA-ribosyltransferase activity  queuosine biosynthetic process  
NDEx NetworkPDCL2
Atlas of Cancer Signalling NetworkPDCL2
Wikipedia pathwaysPDCL2
Orthology - Evolution
OrthoDB132954
GeneTree (enSembl)ENSG00000163440
Phylogenetic Trees/Animal Genes : TreeFamPDCL2
HOVERGENQ8N4E4
HOGENOMQ8N4E4
Homologs : HomoloGenePDCL2
Homology/Alignments : Family Browser (UCSC)PDCL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDCL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDCL2
dbVarPDCL2
ClinVarPDCL2
1000_GenomesPDCL2 
Exome Variant ServerPDCL2
ExAC (Exome Aggregation Consortium)PDCL2 (select the gene name)
Genetic variants : HAPMAP132954
Genomic Variants (DGV)PDCL2 [DGVbeta]
DECIPHERPDCL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDCL2 
Mutations
ICGC Data PortalPDCL2 
TCGA Data PortalPDCL2 
Broad Tumor PortalPDCL2
OASIS PortalPDCL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDCL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDCL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDCL2
DgiDB (Drug Gene Interaction Database)PDCL2
DoCM (Curated mutations)PDCL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDCL2 (select a term)
intoGenPDCL2
Cancer3DPDCL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611676   
Orphanet
MedgenPDCL2
Genetic Testing Registry PDCL2
NextProtQ8N4E4 [Medical]
TSGene132954
GENETestsPDCL2
Target ValidationPDCL2
Huge Navigator PDCL2 [HugePedia]
snp3D : Map Gene to Disease132954
BioCentury BCIQPDCL2
ClinGenPDCL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132954
Chemical/Pharm GKB GenePA134987062
Clinical trialPDCL2
Miscellaneous
canSAR (ICR)PDCL2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDCL2
EVEXPDCL2
GoPubMedPDCL2
iHOPPDCL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:57 CEST 2017

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