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PDCL3 (phosducin like 3)

Identity

Alias_symbol (synonym)VIAF1
Other aliasHTPHLP
PHLP2A
PHLP3
VIAF
HGNC (Hugo) PDCL3
LocusID (NCBI) 79031
Atlas_Id 55948
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 100562956 and ends at 100576739 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDCL3   28860
Cards
Entrez_Gene (NCBI)PDCL3  79031  phosducin like 3
AliasesHTPHLP; PHLP2A; PHLP3; VIAF; 
VIAF1
GeneCards (Weizmann)PDCL3
Ensembl hg19 (Hinxton)ENSG00000115539 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115539 [Gene_View]  chr2:100562956-100576739 [Contig_View]  PDCL3 [Vega]
ICGC DataPortalENSG00000115539
TCGA cBioPortalPDCL3
AceView (NCBI)PDCL3
Genatlas (Paris)PDCL3
WikiGenes79031
SOURCE (Princeton)PDCL3
Genetics Home Reference (NIH)PDCL3
Genomic and cartography
GoldenPath hg38 (UCSC)PDCL3  -     chr2:100562956-100576739 +  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDCL3  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblPDCL3 - 2q11.2 [CytoView hg19]  PDCL3 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBIPDCL3 [Mapview hg19]  PDCL3 [Mapview hg38]
OMIM611678   
Gene and transcription
Genbank (Entrez)AF110511 AF267853 AI741007 AK300827 AK313985
RefSeq transcript (Entrez)NM_024065
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDCL3
Cluster EST : UnigeneHs.469459 [ NCBI ]
CGAP (NCI)Hs.469459
Alternative Splicing GalleryENSG00000115539
Gene ExpressionPDCL3 [ NCBI-GEO ]   PDCL3 [ EBI - ARRAY_EXPRESS ]   PDCL3 [ SEEK ]   PDCL3 [ MEM ]
Gene Expression Viewer (FireBrowse)PDCL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79031
GTEX Portal (Tissue expression)PDCL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2J4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2J4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2J4
Splice isoforms : SwissVarQ9H2J4
PhosPhoSitePlusQ9H2J4
Domains : Interpro (EBI)Antitoxin_Phd/YefM    Phosducin_thioredoxin-like_dom    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)Phosducin (PF02114)   
Domain families : Pfam (NCBI)pfam02114   
Conserved Domain (NCBI)PDCL3
DMDM Disease mutations79031
Blocks (Seattle)PDCL3
SuperfamilyQ9H2J4
Human Protein AtlasENSG00000115539
Peptide AtlasQ9H2J4
HPRD17827
IPIIPI00031629   IPI00922315   IPI00917911   IPI00873451   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2J4
IntAct (EBI)Q9H2J4
FunCoupENSG00000115539
BioGRIDPDCL3
STRING (EMBL)PDCL3
ZODIACPDCL3
Ontologies - Pathways
QuickGOQ9H2J4
Ontology : AmiGOangiogenesis  positive regulation of endothelial cell proliferation  protein binding  nucleus  cytoplasm  cytosol  protein folding  apoptotic process  queuine tRNA-ribosyltransferase activity  queuosine biosynthetic process  viral process  vascular endothelial growth factor receptor 2 binding  protein binding involved in protein folding  positive regulation of angiogenesis  regulation of peptidyl-tyrosine phosphorylation  negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIangiogenesis  positive regulation of endothelial cell proliferation  protein binding  nucleus  cytoplasm  cytosol  protein folding  apoptotic process  queuine tRNA-ribosyltransferase activity  queuosine biosynthetic process  viral process  vascular endothelial growth factor receptor 2 binding  protein binding involved in protein folding  positive regulation of angiogenesis  regulation of peptidyl-tyrosine phosphorylation  negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process  
NDEx NetworkPDCL3
Atlas of Cancer Signalling NetworkPDCL3
Wikipedia pathwaysPDCL3
Orthology - Evolution
OrthoDB79031
GeneTree (enSembl)ENSG00000115539
Phylogenetic Trees/Animal Genes : TreeFamPDCL3
HOVERGENQ9H2J4
HOGENOMQ9H2J4
Homologs : HomoloGenePDCL3
Homology/Alignments : Family Browser (UCSC)PDCL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDCL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDCL3
dbVarPDCL3
ClinVarPDCL3
1000_GenomesPDCL3 
Exome Variant ServerPDCL3
ExAC (Exome Aggregation Consortium)PDCL3 (select the gene name)
Genetic variants : HAPMAP79031
Genomic Variants (DGV)PDCL3 [DGVbeta]
DECIPHERPDCL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDCL3 
Mutations
ICGC Data PortalPDCL3 
TCGA Data PortalPDCL3 
Broad Tumor PortalPDCL3
OASIS PortalPDCL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDCL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDCL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDCL3
DgiDB (Drug Gene Interaction Database)PDCL3
DoCM (Curated mutations)PDCL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDCL3 (select a term)
intoGenPDCL3
Cancer3DPDCL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611678   
Orphanet
MedgenPDCL3
Genetic Testing Registry PDCL3
NextProtQ9H2J4 [Medical]
TSGene79031
GENETestsPDCL3
Target ValidationPDCL3
Huge Navigator PDCL3 [HugePedia]
snp3D : Map Gene to Disease79031
BioCentury BCIQPDCL3
ClinGenPDCL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79031
Chemical/Pharm GKB GenePA134979849
Clinical trialPDCL3
Miscellaneous
canSAR (ICR)PDCL3 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDCL3
EVEXPDCL3
GoPubMedPDCL3
iHOPPDCL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:48:52 CEST 2017

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