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PDDC1 (Parkinson disease 7 domain containing 1)

Identity

Alias_symbol (synonym)FLJ34283
Other alias-
HGNC (Hugo) PDDC1
LocusID (NCBI) 347862
Atlas_Id 71788
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 767223 and ends at 777487 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DEAF1 (11p15.5) / PDDC1 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDDC1   26616
Cards
Entrez_Gene (NCBI)PDDC1  347862  Parkinson disease 7 domain containing 1
Aliases
GeneCards (Weizmann)PDDC1
Ensembl hg19 (Hinxton)ENSG00000177225 [Gene_View]  chr11:767223-777487 [Contig_View]  PDDC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000177225 [Gene_View]  chr11:767223-777487 [Contig_View]  PDDC1 [Vega]
ICGC DataPortalENSG00000177225
TCGA cBioPortalPDDC1
AceView (NCBI)PDDC1
Genatlas (Paris)PDDC1
WikiGenes347862
SOURCE (Princeton)PDDC1
Genetics Home Reference (NIH)PDDC1
Genomic and cartography
GoldenPath hg19 (UCSC)PDDC1  -     chr11:767223-777487 -  11p15.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PDDC1  -     11p15.5   [Description]    (hg38-Dec_2013)
EnsemblPDDC1 - 11p15.5 [CytoView hg19]  PDDC1 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIPDDC1 [Mapview hg19]  PDDC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091602 AK092816 AK094678 AK128653 AK293559
RefSeq transcript (Entrez)NM_182612
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)PDDC1
Cluster EST : UnigeneHs.218362 [ NCBI ]
CGAP (NCI)Hs.218362
Alternative Splicing GalleryENSG00000177225
Gene ExpressionPDDC1 [ NCBI-GEO ]   PDDC1 [ EBI - ARRAY_EXPRESS ]   PDDC1 [ SEEK ]   PDDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)PDDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347862
GTEX Portal (Tissue expression)PDDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NB37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NB37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NB37
Splice isoforms : SwissVarQ8NB37
PhosPhoSitePlusQ8NB37
Domains : Interpro (EBI)Class_I_gatase-like    ThiJ/PfpI   
Domain families : Pfam (Sanger)DJ-1_PfpI (PF01965)   
Domain families : Pfam (NCBI)pfam01965   
Conserved Domain (NCBI)PDDC1
DMDM Disease mutations347862
Blocks (Seattle)PDDC1
SuperfamilyQ8NB37
Human Protein AtlasENSG00000177225
Peptide AtlasQ8NB37
HPRD08172
IPIIPI00168112   IPI00719079   IPI00167976   IPI00443655   IPI01012151   IPI00977662   IPI00976498   IPI00983323   IPI01008788   IPI00985101   
Protein Interaction databases
DIP (DOE-UCLA)Q8NB37
IntAct (EBI)Q8NB37
FunCoupENSG00000177225
BioGRIDPDDC1
STRING (EMBL)PDDC1
ZODIACPDDC1
Ontologies - Pathways
QuickGOQ8NB37
Ontology : AmiGOmolecular_function  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  extracellular exosome  
NDEx NetworkPDDC1
Atlas of Cancer Signalling NetworkPDDC1
Wikipedia pathwaysPDDC1
Orthology - Evolution
OrthoDB347862
GeneTree (enSembl)ENSG00000177225
Phylogenetic Trees/Animal Genes : TreeFamPDDC1
HOVERGENQ8NB37
HOGENOMQ8NB37
Homologs : HomoloGenePDDC1
Homology/Alignments : Family Browser (UCSC)PDDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDDC1
dbVarPDDC1
ClinVarPDDC1
1000_GenomesPDDC1 
Exome Variant ServerPDDC1
ExAC (Exome Aggregation Consortium)PDDC1 (select the gene name)
Genetic variants : HAPMAP347862
Genomic Variants (DGV)PDDC1 [DGVbeta]
DECIPHER (Syndromes)11:767223-777487  ENSG00000177225
CONAN: Copy Number AnalysisPDDC1 
Mutations
ICGC Data PortalPDDC1 
TCGA Data PortalPDDC1 
Broad Tumor PortalPDDC1
OASIS PortalPDDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDDC1
DgiDB (Drug Gene Interaction Database)PDDC1
DoCM (Curated mutations)PDDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDDC1 (select a term)
intoGenPDDC1
Cancer3DPDDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPDDC1
Genetic Testing Registry PDDC1
NextProtQ8NB37 [Medical]
TSGene347862
GENETestsPDDC1
Huge Navigator PDDC1 [HugePedia]
snp3D : Map Gene to Disease347862
BioCentury BCIQPDDC1
ClinGenPDDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347862
Chemical/Pharm GKB GenePA142671193
Clinical trialPDDC1
Miscellaneous
canSAR (ICR)PDDC1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDDC1
EVEXPDDC1
GoPubMedPDDC1
iHOPPDDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:13 CET 2017

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