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PDE9A (phosphodiesterase 9A)

Identity

Alias (NCBI)HSPDE9A2
HGNC (Hugo) PDE9A
LocusID (NCBI) 5152
Atlas_Id 53249
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 42653621 and ends at 42775508 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PDE9A (21q22.3) / ABCG1 (21q22.3)PDE9A (21q22.3) / DHRS7 (14q23.1)PDE9A (21q22.3) / DNAJC5B (8q13.1)
PDE9A (21q22.3) / MUS81 (11q13.1)PDE9A (21q22.3) / NR4A1 (12q13.13)PDE9A (21q22.3) / REXO1L1P (8q21.2)
PDE9A (21q22.3) / SLC37A1 (21q22.3)PDE9A (21q22.3) / VWF (12p13.31)SYNJ1 (21q22.11) / PDE9A (21q22.3)
PDE9A 21q22.3 / ABCG1 21q22.3PDE9A 21q22.3 / DHRS7 14q23.1PDE9A 21q22.3 / SLC37A1 21q22.3
SYNJ1 21q22.11 / PDE9A 21q22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 4 ]
  t(8;21)(q21;q22) PDE9A/REXO1L1P
t(11;21)(q13;q22) PDE9A/MUS81
t(12;21)(p13;q22) PDE9A/VWF
t(21;21)(q22;q22) WDR4/PDE9A


External links

Nomenclature
HGNC (Hugo)PDE9A   8795
Cards
Entrez_Gene (NCBI)PDE9A    phosphodiesterase 9A
AliasesHSPDE9A2
GeneCards (Weizmann)PDE9A
Ensembl hg19 (Hinxton)ENSG00000160191 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160191 [Gene_View]  ENSG00000160191 [Sequence]  chr21:42653621-42775508 [Contig_View]  PDE9A [Vega]
ICGC DataPortalENSG00000160191
TCGA cBioPortalPDE9A
AceView (NCBI)PDE9A
Genatlas (Paris)PDE9A
SOURCE (Princeton)PDE9A
Genetics Home Reference (NIH)PDE9A
Genomic and cartography
GoldenPath hg38 (UCSC)PDE9A  -     chr21:42653621-42775508 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDE9A  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathPDE9A - 21q22.3 [CytoView hg19]  PDE9A - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000160191
Genome Data Viewer NCBIPDE9A [Mapview hg19]  
OMIM602973   
Gene and transcription
Genbank (Entrez)AF048837 AF067223 AF067224 AF067225 AF067226
RefSeq transcript (Entrez)NM_001001567 NM_001001568 NM_001001569 NM_001001570 NM_001001571 NM_001001572 NM_001001573 NM_001001574 NM_001001575 NM_001001576 NM_001001577 NM_001001578 NM_001001579 NM_001001580 NM_001001581 NM_001001582 NM_001001583 NM_001001584 NM_001001585 NM_001315533 NM_002606
Consensus coding sequences : CCDS (NCBI)PDE9A
Gene ExpressionPDE9A [ NCBI-GEO ]   PDE9A [ EBI - ARRAY_EXPRESS ]   PDE9A [ SEEK ]   PDE9A [ MEM ]
Gene Expression Viewer (FireBrowse)PDE9A [ Firebrowse - Broad ]
GenevisibleExpression of PDE9A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5152
GTEX Portal (Tissue expression)PDE9A
Human Protein AtlasENSG00000160191-PDE9A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PDE9A
Human Protein Atlas [tissue]ENSG00000160191-PDE9A [tissue]
HPRD09115
Protein Interaction databases
BioGRIDPDE9A
STRING (EMBL)PDE9A
ZODIACPDE9A
Ontologies - Pathways
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPDE9A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:24:45 CEST 2021

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