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PDF (peptide deformylase (mitochondrial))

Identity

Other alias-
HGNC (Hugo) PDF
LocusID (NCBI) 64146
Atlas_Id 46225
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 69362524 and ends at 69364498 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SKI (1p36.33) / PDF (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDF   30012
Cards
Entrez_Gene (NCBI)PDF  64146  peptide deformylase (mitochondrial)
Aliases
GeneCards (Weizmann)PDF
Ensembl hg19 (Hinxton)ENSG00000258429 [Gene_View]  chr16:69362524-69364498 [Contig_View]  PDF [Vega]
Ensembl hg38 (Hinxton)ENSG00000258429 [Gene_View]  chr16:69362524-69364498 [Contig_View]  PDF [Vega]
ICGC DataPortalENSG00000258429
TCGA cBioPortalPDF
AceView (NCBI)PDF
Genatlas (Paris)PDF
WikiGenes64146
SOURCE (Princeton)PDF
Genetics Home Reference (NIH)PDF
Genomic and cartography
GoldenPath hg19 (UCSC)PDF  -     chr16:69362524-69364498 -  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PDF  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblPDF - 16q22.1 [CytoView hg19]  PDF - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIPDF [Mapview hg19]  PDF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF239156 AF322879 BC019912
RefSeq transcript (Entrez)NM_022341
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_009013 NG_033043 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)PDF
Cluster EST : UnigeneHs.130849 [ NCBI ]
CGAP (NCI)Hs.130849
Alternative Splicing GalleryENSG00000258429
Gene ExpressionPDF [ NCBI-GEO ]   PDF [ EBI - ARRAY_EXPRESS ]   PDF [ SEEK ]   PDF [ MEM ]
Gene Expression Viewer (FireBrowse)PDF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64146
GTEX Portal (Tissue expression)PDF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBH1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBH1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBH1
Splice isoforms : SwissVarQ9HBH1
Catalytic activity : Enzyme3.5.1.88 [ Enzyme-Expasy ]   3.5.1.883.5.1.88 [ IntEnz-EBI ]   3.5.1.88 [ BRENDA ]   3.5.1.88 [ KEGG ]   
PhosPhoSitePlusQ9HBH1
Domains : Interpro (EBI)Fmet_deformylase    Peptide_deformylase   
Domain families : Pfam (Sanger)Pep_deformylase (PF01327)   
Domain families : Pfam (NCBI)pfam01327   
Conserved Domain (NCBI)PDF
DMDM Disease mutations64146
Blocks (Seattle)PDF
PDB (SRS)3G5K    3G5P   
PDB (PDBSum)3G5K    3G5P   
PDB (IMB)3G5K    3G5P   
PDB (RSDB)3G5K    3G5P   
Structural Biology KnowledgeBase3G5K    3G5P   
SCOP (Structural Classification of Proteins)3G5K    3G5P   
CATH (Classification of proteins structures)3G5K    3G5P   
SuperfamilyQ9HBH1
Human Protein AtlasENSG00000258429
Peptide AtlasQ9HBH1
HPRD17829
IPIIPI00007060   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBH1
IntAct (EBI)Q9HBH1
FunCoupENSG00000258429
BioGRIDPDF
STRING (EMBL)PDF
ZODIACPDF
Ontologies - Pathways
QuickGOQ9HBH1
Ontology : AmiGOiron ion binding  mitochondrion  translation  positive regulation of cell proliferation  peptidyl-methionine modification  N-terminal protein amino acid modification  peptide deformylase activity  
Ontology : EGO-EBIiron ion binding  mitochondrion  translation  positive regulation of cell proliferation  peptidyl-methionine modification  N-terminal protein amino acid modification  peptide deformylase activity  
NDEx NetworkPDF
Atlas of Cancer Signalling NetworkPDF
Wikipedia pathwaysPDF
Orthology - Evolution
OrthoDB64146
GeneTree (enSembl)ENSG00000258429
Phylogenetic Trees/Animal Genes : TreeFamPDF
HOVERGENQ9HBH1
HOGENOMQ9HBH1
Homologs : HomoloGenePDF
Homology/Alignments : Family Browser (UCSC)PDF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDF
dbVarPDF
ClinVarPDF
1000_GenomesPDF 
Exome Variant ServerPDF
ExAC (Exome Aggregation Consortium)PDF (select the gene name)
Genetic variants : HAPMAP64146
Genomic Variants (DGV)PDF [DGVbeta]
DECIPHER (Syndromes)16:69362524-69364498  ENSG00000258429
CONAN: Copy Number AnalysisPDF 
Mutations
ICGC Data PortalPDF 
TCGA Data PortalPDF 
Broad Tumor PortalPDF
OASIS PortalPDF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDF
DgiDB (Drug Gene Interaction Database)PDF
DoCM (Curated mutations)PDF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDF (select a term)
intoGenPDF
Cancer3DPDF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPDF
Genetic Testing Registry PDF
NextProtQ9HBH1 [Medical]
TSGene64146
GENETestsPDF
Huge Navigator PDF [HugePedia]
snp3D : Map Gene to Disease64146
BioCentury BCIQPDF
ClinGenPDF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64146
Chemical/Pharm GKB GenePA144596394
Clinical trialPDF
Miscellaneous
canSAR (ICR)PDF (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDF
EVEXPDF
GoPubMedPDF
iHOPPDF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:20:50 CET 2017

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