Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PDGFRL (platelet derived growth factor receptor like)

Identity

Alias_namesplatelet-derived growth factor receptor-like
Alias_symbol (synonym)PRLTS
Other aliasPDGRL
HGNC (Hugo) PDGFRL
LocusID (NCBI) 5157
Atlas_Id 41681
Location 8p22  [Link to chromosome band 8p22]
Location_base_pair Starts at 17576433 and ends at 17643133 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PDGFRL (8p22) / PDGFRL (8p22)PDGFRL (8p22) / VPS37A (8p22)PDGFRL 8p22 / VPS37A 8p22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDGFRL   8805
Cards
Entrez_Gene (NCBI)PDGFRL  5157  platelet derived growth factor receptor like
AliasesPDGRL; PRLTS
GeneCards (Weizmann)PDGFRL
Ensembl hg19 (Hinxton)ENSG00000104213 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104213 [Gene_View]  chr8:17576433-17643133 [Contig_View]  PDGFRL [Vega]
ICGC DataPortalENSG00000104213
TCGA cBioPortalPDGFRL
AceView (NCBI)PDGFRL
Genatlas (Paris)PDGFRL
WikiGenes5157
SOURCE (Princeton)PDGFRL
Genetics Home Reference (NIH)PDGFRL
Genomic and cartography
GoldenPath hg38 (UCSC)PDGFRL  -     chr8:17576433-17643133 +  8p22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDGFRL  -     8p22   [Description]    (hg19-Feb_2009)
EnsemblPDGFRL - 8p22 [CytoView hg19]  PDGFRL - 8p22 [CytoView hg38]
Mapping of homologs : NCBIPDGFRL [Mapview hg19]  PDGFRL [Mapview hg38]
OMIM114550   604584   
Gene and transcription
Genbank (Entrez)AK289450 BC010927 BQ446405 CR541952 D37965
RefSeq transcript (Entrez)NM_006207
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDGFRL
Cluster EST : UnigeneHs.458573 [ NCBI ]
CGAP (NCI)Hs.458573
Alternative Splicing GalleryENSG00000104213
Gene ExpressionPDGFRL [ NCBI-GEO ]   PDGFRL [ EBI - ARRAY_EXPRESS ]   PDGFRL [ SEEK ]   PDGFRL [ MEM ]
Gene Expression Viewer (FireBrowse)PDGFRL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5157
GTEX Portal (Tissue expression)PDGFRL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15198   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15198  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15198
Splice isoforms : SwissVarQ15198
PhosPhoSitePlusQ15198
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)PDGFRL
DMDM Disease mutations5157
Blocks (Seattle)PDGFRL
SuperfamilyQ15198
Human Protein AtlasENSG00000104213
Peptide AtlasQ15198
HPRD05206
IPIIPI00006236   
Protein Interaction databases
DIP (DOE-UCLA)Q15198
IntAct (EBI)Q15198
FunCoupENSG00000104213
BioGRIDPDGFRL
STRING (EMBL)PDGFRL
ZODIACPDGFRL
Ontologies - Pathways
QuickGOQ15198
Ontology : AmiGOplatelet activating factor receptor activity  platelet-derived growth factor beta-receptor activity  cellular_component  extracellular region  G-protein coupled receptor signaling pathway  biological_process  platelet-derived growth factor receptor-beta signaling pathway  
Ontology : EGO-EBIplatelet activating factor receptor activity  platelet-derived growth factor beta-receptor activity  cellular_component  extracellular region  G-protein coupled receptor signaling pathway  biological_process  platelet-derived growth factor receptor-beta signaling pathway  
NDEx NetworkPDGFRL
Atlas of Cancer Signalling NetworkPDGFRL
Wikipedia pathwaysPDGFRL
Orthology - Evolution
OrthoDB5157
GeneTree (enSembl)ENSG00000104213
Phylogenetic Trees/Animal Genes : TreeFamPDGFRL
HOVERGENQ15198
HOGENOMQ15198
Homologs : HomoloGenePDGFRL
Homology/Alignments : Family Browser (UCSC)PDGFRL
Gene fusions - Rearrangements
Fusion: TCGAPDGFRL 8p22 VPS37A 8p22 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDGFRL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDGFRL
dbVarPDGFRL
ClinVarPDGFRL
1000_GenomesPDGFRL 
Exome Variant ServerPDGFRL
ExAC (Exome Aggregation Consortium)PDGFRL (select the gene name)
Genetic variants : HAPMAP5157
Genomic Variants (DGV)PDGFRL [DGVbeta]
DECIPHERPDGFRL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDGFRL 
Mutations
ICGC Data PortalPDGFRL 
TCGA Data PortalPDGFRL 
Broad Tumor PortalPDGFRL
OASIS PortalPDGFRL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDGFRL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDGFRL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch PDGFRL
DgiDB (Drug Gene Interaction Database)PDGFRL
DoCM (Curated mutations)PDGFRL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDGFRL (select a term)
intoGenPDGFRL
Cancer3DPDGFRL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM114550    604584   
Orphanet
MedgenPDGFRL
Genetic Testing Registry PDGFRL
NextProtQ15198 [Medical]
TSGene5157
GENETestsPDGFRL
Target ValidationPDGFRL
Huge Navigator PDGFRL [HugePedia]
snp3D : Map Gene to Disease5157
BioCentury BCIQPDGFRL
ClinGenPDGFRL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5157
Chemical/Pharm GKB GenePA33149
Clinical trialPDGFRL
Miscellaneous
canSAR (ICR)PDGFRL (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDGFRL
EVEXPDGFRL
GoPubMedPDGFRL
iHOPPDGFRL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:10:20 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.