Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PDGFRL (platelet-derived growth factor receptor-like)

Identity

Other namesPDGRL
PRLTS
HGNC (Hugo) PDGFRL
LocusID (NCBI) 5157
Location 8p22
Location_base_pair Starts at 17433942 and ends at 17500642 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PDGFRL   8805
Entrez_Gene (NCBI)PDGFRL  5157  platelet-derived growth factor receptor-like
Cards
GeneCards (Weizmann)PDGFRL
Ensembl (Hinxton)ENSG00000104213 [Gene_View]  chr8:17433942-17500642 [Contig_View]  PDGFRL [Vega]
AceView (NCBI)PDGFRL
Genatlas (Paris)PDGFRL
SOURCE (Stanford)NM_006207
Genomic and cartography
GoldenPath (UCSC)PDGFRL  -  8p22   chr8:17433942-17500642 +  8p22   [Description]    (hg19-Feb_2009)
EnsemblPDGFRL - 8p22 [CytoView]
Mapping of homologs : NCBIPDGFRL [Mapview]
OMIM114500   114550   604584   
Gene and transcription
Genbank (Entrez)AK289450 BC010927 BQ446405 CR541952 D37965
RefSeq transcript (SRS)NM_006207
RefSeq transcript (Entrez)NM_006207
RefSeq genomic (SRS)AC_000140 NC_000008 NC_018919 NG_023332 NT_167187 NW_001839126 NW_004078035
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NG_023332 NT_167187 NW_001839126 NW_004078035
Consensus coding sequences : CCDS (NCBI)PDGFRL
Cluster EST : UnigeneHs.458573 [ SRS ] Hs.458573 [ NCBI ]
CGAP (NCI)Hs.458573
Alternative Splicing : Fast-db (Paris)GSHG0028843
Alternative Splicing GalleryENSG00000104213
Gene ExpressionPDGFRL [ NCBI-GEO ]   PDGFRL [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15198 (SRS) Q15198 (Uniprot)
NextProtQ15198
With graphics : InterProQ15198
Splice isoforms : SwissVarQ15198(Swissvar)
Domaine pattern : Prosite (SRS)IG_LIKE (PS50835)   
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (SRS)Ig-like    Ig-like_fold    Ig_I-set    Ig_sub   
Domains : Interpro (EBI)Ig-like    Ig-like_fold    Ig_I-set    Ig_sub   
Related proteins : CluSTrQ15198
Domain families : Pfam (SRS)I-set (PF07679)   
Domain families : Pfam (Sanger)I-set (PF07679)   
Domain families : Pfam (NCBI)pfam07679   
Domain families : Smart (EMBL)IG (SM00409)  
DMDM5157
Blocks (Seattle)Q15198
Human Protein AtlasENSG00000104213
HPRD05206
IPIIPI00006236   
Protein Interaction databases
DIP (DOE-UCLA)Q15198
IntAct (EBI)Q15198
FunCoupENSG00000104213
REACTOMEPDGFRL
Protein Interaction Database5157
BioGRIDPDGFRL
InParanoidQ15198
Interologous Interaction database Q15198
IntegromeDBPDGFRL
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PDGFRL
SNP (GeneSNP Utah)PDGFRL
SNP : HGBasePDGFRL
Genetic variants : HAPMAPPDGFRL
Somatic Mutations in Cancer : COSMICPDGFRL 
CONAN: Copy Number AnalysisPDGFRL 
Mutations and Diseases : HGMDPDGFRL
OMIM114500    114550    604584   
GENETests114500    114550    604584   
Disease Genetic AssociationPDGFRL
Huge Navigator PDGFRL [HugePedia]  PDGFRL [HugeCancerGEM]
Genomic VariantsPDGFRL  PDGFRL [DGVbeta]
snp3D : Map Gene to Disease5157
General knowledge
Homologs : HomoloGenePDGFRL
Homology/Alignments : Family Browser (UCSC)PDGFRL
Phylogenetic Trees/Animal Genes : TreeFamPDGFRL
Chemical/Protein Interactions : CTD5157
Chemical/Pharm GKB GenePA33149
Clinical trialPDGFRL
Cancer Resource (Charite)ENSG00000104213
Ontology : AmiGOplatelet activating factor receptor activity  platelet-derived growth factor beta-receptor activity  cellular_component  extracellular region  biological_process  platelet-derived growth factor receptor-beta signaling pathway  
Ontology : EGO-EBIplatelet activating factor receptor activity  platelet-derived growth factor beta-receptor activity  cellular_component  extracellular region  biological_process  platelet-derived growth factor receptor-beta signaling pathway  
Other databases
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
PubGenePDGFRL
iHOPPDGFRL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:35:45 CEST 2013
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