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PDGFRL (platelet derived growth factor receptor like)

Identity

Alias (NCBI)PDGRL
PRLTS
HGNC (Hugo) PDGFRL
HGNC Alias symbPRLTS
HGNC Previous nameplatelet-derived growth factor receptor-like
LocusID (NCBI) 5157
Atlas_Id 41681
Location 8p22  [Link to chromosome band 8p22]
Location_base_pair Starts at 17576433 and ends at 17643133 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PDGFRL (8p22) / PDGFRL (8p22)PDGFRL (8p22) / VPS37A (8p22)PDGFRL 8p22 / VPS37A 8p22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PDGFRL   8805
Cards
Entrez_Gene (NCBI)PDGFRL    platelet derived growth factor receptor like
AliasesPDGRL; PRLTS
GeneCards (Weizmann)PDGFRL
Ensembl hg19 (Hinxton)ENSG00000104213 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104213 [Gene_View]  ENSG00000104213 [Sequence]  chr8:17576433-17643133 [Contig_View]  PDGFRL [Vega]
ICGC DataPortalENSG00000104213
TCGA cBioPortalPDGFRL
AceView (NCBI)PDGFRL
Genatlas (Paris)PDGFRL
SOURCE (Princeton)PDGFRL
Genetics Home Reference (NIH)PDGFRL
Genomic and cartography
GoldenPath hg38 (UCSC)PDGFRL  -     chr8:17576433-17643133 +  8p22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDGFRL  -     8p22   [Description]    (hg19-Feb_2009)
GoldenPathPDGFRL - 8p22 [CytoView hg19]  PDGFRL - 8p22 [CytoView hg38]
ImmunoBaseENSG00000104213
Genome Data Viewer NCBIPDGFRL [Mapview hg19]  
OMIM114500   114550   604584   
Gene and transcription
Genbank (Entrez)AK289450 BC010927 BQ446405 CR541952 D37965
RefSeq transcript (Entrez)NM_001372073 NM_006207
Consensus coding sequences : CCDS (NCBI)PDGFRL
Gene ExpressionPDGFRL [ NCBI-GEO ]   PDGFRL [ EBI - ARRAY_EXPRESS ]   PDGFRL [ SEEK ]   PDGFRL [ MEM ]
Gene Expression Viewer (FireBrowse)PDGFRL [ Firebrowse - Broad ]
GenevisibleExpression of PDGFRL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5157
GTEX Portal (Tissue expression)PDGFRL
Human Protein AtlasENSG00000104213-PDGFRL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15198   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15198  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15198
PhosPhoSitePlusQ15198
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_sub2    PDGFRL   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)PDGFRL
SuperfamilyQ15198
AlphaFold pdb e-kbQ15198   
Human Protein Atlas [tissue]ENSG00000104213-PDGFRL [tissue]
HPRD05206
Protein Interaction databases
DIP (DOE-UCLA)Q15198
IntAct (EBI)Q15198
BioGRIDPDGFRL
STRING (EMBL)PDGFRL
ZODIACPDGFRL
Ontologies - Pathways
QuickGOQ15198
Ontology : AmiGOplatelet activating factor receptor activity  platelet-derived growth factor beta-receptor activity  cellular_component  extracellular region  G protein-coupled receptor signaling pathway  biological_process  platelet-derived growth factor receptor-beta signaling pathway  
Ontology : EGO-EBIplatelet activating factor receptor activity  platelet-derived growth factor beta-receptor activity  cellular_component  extracellular region  G protein-coupled receptor signaling pathway  biological_process  platelet-derived growth factor receptor-beta signaling pathway  
NDEx NetworkPDGFRL
Atlas of Cancer Signalling NetworkPDGFRL
Wikipedia pathwaysPDGFRL
Orthology - Evolution
OrthoDB5157
GeneTree (enSembl)ENSG00000104213
Phylogenetic Trees/Animal Genes : TreeFamPDGFRL
Homologs : HomoloGenePDGFRL
Homology/Alignments : Family Browser (UCSC)PDGFRL
Gene fusions - Rearrangements
Fusion : QuiverPDGFRL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDGFRL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDGFRL
dbVarPDGFRL
ClinVarPDGFRL
MonarchPDGFRL
1000_GenomesPDGFRL 
Exome Variant ServerPDGFRL
GNOMAD BrowserENSG00000104213
Varsome BrowserPDGFRL
ACMGPDGFRL variants
VarityQ15198
Genomic Variants (DGV)PDGFRL [DGVbeta]
DECIPHERPDGFRL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDGFRL 
Mutations
ICGC Data PortalPDGFRL 
TCGA Data PortalPDGFRL 
Broad Tumor PortalPDGFRL
OASIS PortalPDGFRL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDGFRL  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPDGFRL
Mutations and Diseases : HGMDPDGFRL
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPDGFRL
DgiDB (Drug Gene Interaction Database)PDGFRL
DoCM (Curated mutations)PDGFRL
CIViC (Clinical Interpretations of Variants in Cancer)PDGFRL
Cancer3DPDGFRL
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM114500    114550    604584   
Orphanet
DisGeNETPDGFRL
MedgenPDGFRL
Genetic Testing Registry PDGFRL
NextProtQ15198 [Medical]
GENETestsPDGFRL
Target ValidationPDGFRL
Huge Navigator PDGFRL [HugePedia]
ClinGenPDGFRL
Clinical trials, drugs, therapy
MyCancerGenomePDGFRL
Protein Interactions : CTDPDGFRL
Pharm GKB GenePA33149
PharosQ15198
Clinical trialPDGFRL
Miscellaneous
canSAR (ICR)PDGFRL
HarmonizomePDGFRL
DataMed IndexPDGFRL
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPDGFRL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:24:46 CEST 2021

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