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PDIK1L (PDLIM1 interacting kinase 1 like)

Identity

Alias_symbol (synonym)CLIK1L
Other aliasSTK35L2
HGNC (Hugo) PDIK1L
LocusID (NCBI) 149420
Atlas_Id 71803
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26111165 and ends at 26125548 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD99 (Xp22.33) / PDIK1L (1p36.11)USP15 (12q14.1) / PDIK1L (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDIK1L   18981
Cards
Entrez_Gene (NCBI)PDIK1L  149420  PDLIM1 interacting kinase 1 like
AliasesCLIK1L; STK35L2
GeneCards (Weizmann)PDIK1L
Ensembl hg19 (Hinxton)ENSG00000175087 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175087 [Gene_View]  chr1:26111165-26125548 [Contig_View]  PDIK1L [Vega]
ICGC DataPortalENSG00000175087
TCGA cBioPortalPDIK1L
AceView (NCBI)PDIK1L
Genatlas (Paris)PDIK1L
WikiGenes149420
SOURCE (Princeton)PDIK1L
Genetics Home Reference (NIH)PDIK1L
Genomic and cartography
GoldenPath hg38 (UCSC)PDIK1L  -     chr1:26111165-26125548 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDIK1L  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblPDIK1L - 1p36.11 [CytoView hg19]  PDIK1L - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIPDIK1L [Mapview hg19]  PDIK1L [Mapview hg38]
OMIM610785   
Gene and transcription
Genbank (Entrez)AF411102 AK312872 AL137407 AL834290 BC028713
RefSeq transcript (Entrez)NM_001243532 NM_001243533 NM_152835
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDIK1L
Cluster EST : UnigeneHs.736837 [ NCBI ]
CGAP (NCI)Hs.736837
Alternative Splicing GalleryENSG00000175087
Gene ExpressionPDIK1L [ NCBI-GEO ]   PDIK1L [ EBI - ARRAY_EXPRESS ]   PDIK1L [ SEEK ]   PDIK1L [ MEM ]
Gene Expression Viewer (FireBrowse)PDIK1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149420
GTEX Portal (Tissue expression)PDIK1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N165   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N165  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N165
Splice isoforms : SwissVarQ8N165
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
PhosPhoSitePlusQ8N165
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)PDIK1L
DMDM Disease mutations149420
Blocks (Seattle)PDIK1L
SuperfamilyQ8N165
Human Protein AtlasENSG00000175087
Peptide AtlasQ8N165
HPRD15110
IPIIPI00166098   IPI00642796   
Protein Interaction databases
DIP (DOE-UCLA)Q8N165
IntAct (EBI)Q8N165
FunCoupENSG00000175087
BioGRIDPDIK1L
STRING (EMBL)PDIK1L
ZODIACPDIK1L
Ontologies - Pathways
QuickGOQ8N165
Ontology : AmiGOprotein serine/threonine kinase activity  protein binding  ATP binding  nucleoplasm  protein phosphorylation  
Ontology : EGO-EBIprotein serine/threonine kinase activity  protein binding  ATP binding  nucleoplasm  protein phosphorylation  
NDEx NetworkPDIK1L
Atlas of Cancer Signalling NetworkPDIK1L
Wikipedia pathwaysPDIK1L
Orthology - Evolution
OrthoDB149420
GeneTree (enSembl)ENSG00000175087
Phylogenetic Trees/Animal Genes : TreeFamPDIK1L
HOVERGENQ8N165
HOGENOMQ8N165
Homologs : HomoloGenePDIK1L
Homology/Alignments : Family Browser (UCSC)PDIK1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDIK1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDIK1L
dbVarPDIK1L
ClinVarPDIK1L
1000_GenomesPDIK1L 
Exome Variant ServerPDIK1L
ExAC (Exome Aggregation Consortium)PDIK1L (select the gene name)
Genetic variants : HAPMAP149420
Genomic Variants (DGV)PDIK1L [DGVbeta]
DECIPHERPDIK1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDIK1L 
Mutations
ICGC Data PortalPDIK1L 
TCGA Data PortalPDIK1L 
Broad Tumor PortalPDIK1L
OASIS PortalPDIK1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDIK1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDIK1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDIK1L
DgiDB (Drug Gene Interaction Database)PDIK1L
DoCM (Curated mutations)PDIK1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDIK1L (select a term)
intoGenPDIK1L
Cancer3DPDIK1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610785   
Orphanet
MedgenPDIK1L
Genetic Testing Registry PDIK1L
NextProtQ8N165 [Medical]
TSGene149420
GENETestsPDIK1L
Target ValidationPDIK1L
Huge Navigator PDIK1L [HugePedia]
snp3D : Map Gene to Disease149420
BioCentury BCIQPDIK1L
ClinGenPDIK1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149420
Chemical/Pharm GKB GenePA134959839
Clinical trialPDIK1L
Miscellaneous
canSAR (ICR)PDIK1L (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDIK1L
EVEXPDIK1L
GoPubMedPDIK1L
iHOPPDIK1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:59 CEST 2017

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