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PDILT (protein disulfide isomerase like, testis expressed)

Identity

Alias_namesprotein disulfide isomerase-like, testis expressed
Alias_symbol (synonym)PDIA7
Other alias
HGNC (Hugo) PDILT
LocusID (NCBI) 204474
Atlas_Id 71804
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 20359170 and ends at 20404711 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LOC100289187 () / PDILT (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDILT   27338
Cards
Entrez_Gene (NCBI)PDILT  204474  protein disulfide isomerase like, testis expressed
AliasesPDIA7
GeneCards (Weizmann)PDILT
Ensembl hg19 (Hinxton)ENSG00000169340 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169340 [Gene_View]  chr16:20359170-20404711 [Contig_View]  PDILT [Vega]
ICGC DataPortalENSG00000169340
TCGA cBioPortalPDILT
AceView (NCBI)PDILT
Genatlas (Paris)PDILT
WikiGenes204474
SOURCE (Princeton)PDILT
Genetics Home Reference (NIH)PDILT
Genomic and cartography
GoldenPath hg38 (UCSC)PDILT  -     chr16:20359170-20404711 -  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDILT  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblPDILT - 16p12.3 [CytoView hg19]  PDILT - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIPDILT [Mapview hg19]  PDILT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097476 BC042607 BC044936
RefSeq transcript (Entrez)NM_174924
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDILT
Cluster EST : UnigeneHs.376025 [ NCBI ]
CGAP (NCI)Hs.376025
Alternative Splicing GalleryENSG00000169340
Gene ExpressionPDILT [ NCBI-GEO ]   PDILT [ EBI - ARRAY_EXPRESS ]   PDILT [ SEEK ]   PDILT [ MEM ]
Gene Expression Viewer (FireBrowse)PDILT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)204474
GTEX Portal (Tissue expression)PDILT
Human Protein AtlasENSG00000169340-PDILT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N807   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N807  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N807
Splice isoforms : SwissVarQ8N807
PhosPhoSitePlusQ8N807
Domaine pattern : Prosite (Expaxy)ER_TARGET (PS00014)    THIOREDOXIN_2 (PS51352)   
Domains : Interpro (EBI)Thioredoxin-like_fold    Thioredoxin_domain   
Domain families : Pfam (Sanger)Thioredoxin (PF00085)   
Domain families : Pfam (NCBI)pfam00085   
Conserved Domain (NCBI)PDILT
DMDM Disease mutations204474
Blocks (Seattle)PDILT
PDB (SRS)4NWY   
PDB (PDBSum)4NWY   
PDB (IMB)4NWY   
PDB (RSDB)4NWY   
Structural Biology KnowledgeBase4NWY   
SCOP (Structural Classification of Proteins)4NWY   
CATH (Classification of proteins structures)4NWY   
SuperfamilyQ8N807
Human Protein Atlas [tissue]ENSG00000169340-PDILT [tissue]
Peptide AtlasQ8N807
HPRD15111
IPIIPI00646007   
Protein Interaction databases
DIP (DOE-UCLA)Q8N807
IntAct (EBI)Q8N807
FunCoupENSG00000169340
BioGRIDPDILT
STRING (EMBL)PDILT
ZODIACPDILT
Ontologies - Pathways
QuickGOQ8N807
Ontology : AmiGOprotein disulfide isomerase activity  endoplasmic reticulum  protein folding  multicellular organism development  spermatid development  cell migration  peptidyl-proline hydroxylation  peptidyl-proline 4-dioxygenase activity  response to endoplasmic reticulum stress  cell redox homeostasis  regulation of oxidative stress-induced intrinsic apoptotic signaling pathway  
Ontology : EGO-EBIprotein disulfide isomerase activity  endoplasmic reticulum  protein folding  multicellular organism development  spermatid development  cell migration  peptidyl-proline hydroxylation  peptidyl-proline 4-dioxygenase activity  response to endoplasmic reticulum stress  cell redox homeostasis  regulation of oxidative stress-induced intrinsic apoptotic signaling pathway  
NDEx NetworkPDILT
Atlas of Cancer Signalling NetworkPDILT
Wikipedia pathwaysPDILT
Orthology - Evolution
OrthoDB204474
GeneTree (enSembl)ENSG00000169340
Phylogenetic Trees/Animal Genes : TreeFamPDILT
HOVERGENQ8N807
HOGENOMQ8N807
Homologs : HomoloGenePDILT
Homology/Alignments : Family Browser (UCSC)PDILT
Gene fusions - Rearrangements
Fusion: Tumor Portal PDILT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDILT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDILT
dbVarPDILT
ClinVarPDILT
1000_GenomesPDILT 
Exome Variant ServerPDILT
ExAC (Exome Aggregation Consortium)ENSG00000169340
GNOMAD BrowserENSG00000169340
Genetic variants : HAPMAP204474
Genomic Variants (DGV)PDILT [DGVbeta]
DECIPHERPDILT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDILT 
Mutations
ICGC Data PortalPDILT 
TCGA Data PortalPDILT 
Broad Tumor PortalPDILT
OASIS PortalPDILT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDILT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDILT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDILT
DgiDB (Drug Gene Interaction Database)PDILT
DoCM (Curated mutations)PDILT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDILT (select a term)
intoGenPDILT
Cancer3DPDILT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPDILT
Genetic Testing Registry PDILT
NextProtQ8N807 [Medical]
TSGene204474
GENETestsPDILT
Target ValidationPDILT
Huge Navigator PDILT [HugePedia]
snp3D : Map Gene to Disease204474
BioCentury BCIQPDILT
ClinGenPDILT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD204474
Chemical/Pharm GKB GenePA164724442
Clinical trialPDILT
Miscellaneous
canSAR (ICR)PDILT (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDILT
EVEXPDILT
GoPubMedPDILT
iHOPPDILT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:22:10 CET 2017

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