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PDLIM2 (PDZ and LIM domain 2)

Identity

Other aliasMYSTIQUE
SLIM
HGNC (Hugo) PDLIM2
LocusID (NCBI) 64236
Atlas_Id 51491
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 22578741 and ends at 22594297 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PDLIM2 (8p21.3) / PDLIM2 (8p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDLIM2   13992
Cards
Entrez_Gene (NCBI)PDLIM2  64236  PDZ and LIM domain 2
AliasesMYSTIQUE; SLIM
GeneCards (Weizmann)PDLIM2
Ensembl hg19 (Hinxton)ENSG00000120913 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120913 [Gene_View]  chr8:22578741-22594297 [Contig_View]  PDLIM2 [Vega]
ICGC DataPortalENSG00000120913
TCGA cBioPortalPDLIM2
AceView (NCBI)PDLIM2
Genatlas (Paris)PDLIM2
WikiGenes64236
SOURCE (Princeton)PDLIM2
Genetics Home Reference (NIH)PDLIM2
Genomic and cartography
GoldenPath hg38 (UCSC)PDLIM2  -     chr8:22578741-22594297 +  8p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDLIM2  -     8p21.3   [Description]    (hg19-Feb_2009)
EnsemblPDLIM2 - 8p21.3 [CytoView hg19]  PDLIM2 - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBIPDLIM2 [Mapview hg19]  PDLIM2 [Mapview hg38]
OMIM609722   
Gene and transcription
Genbank (Entrez)AF289563 AK024498 AK027800 AK055582 AK055782
RefSeq transcript (Entrez)NM_021630 NM_176871 NM_198042
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDLIM2
Cluster EST : UnigeneHs.632034 [ NCBI ]
CGAP (NCI)Hs.632034
Alternative Splicing GalleryENSG00000120913
Gene ExpressionPDLIM2 [ NCBI-GEO ]   PDLIM2 [ EBI - ARRAY_EXPRESS ]   PDLIM2 [ SEEK ]   PDLIM2 [ MEM ]
Gene Expression Viewer (FireBrowse)PDLIM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64236
GTEX Portal (Tissue expression)PDLIM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JY6
Splice isoforms : SwissVarQ96JY6
PhosPhoSitePlusQ96JY6
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)    PDZ (PS50106)   
Domains : Interpro (EBI)DUF4749    PDZ    Znf_LIM   
Domain families : Pfam (Sanger)DUF4749 (PF15936)    LIM (PF00412)    PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam15936    pfam00412    pfam00595   
Domain families : Smart (EMBL)LIM (SM00132)  PDZ (SM00228)  
Conserved Domain (NCBI)PDLIM2
DMDM Disease mutations64236
Blocks (Seattle)PDLIM2
PDB (SRS)2PA1    3PDV   
PDB (PDBSum)2PA1    3PDV   
PDB (IMB)2PA1    3PDV   
PDB (RSDB)2PA1    3PDV   
Structural Biology KnowledgeBase2PA1    3PDV   
SCOP (Structural Classification of Proteins)2PA1    3PDV   
CATH (Classification of proteins structures)2PA1    3PDV   
SuperfamilyQ96JY6
Human Protein AtlasENSG00000120913
Peptide AtlasQ96JY6
HPRD17831
IPIIPI00396593   IPI00383278   IPI00007983   IPI00386717   IPI00917522   IPI00179136   IPI01010772   IPI00916184   IPI00916064   IPI00917643   IPI00916415   IPI00916863   IPI00915891   
Protein Interaction databases
DIP (DOE-UCLA)Q96JY6
IntAct (EBI)Q96JY6
FunCoupENSG00000120913
BioGRIDPDLIM2
STRING (EMBL)PDLIM2
ZODIACPDLIM2
Ontologies - Pathways
QuickGOQ96JY6
Ontology : AmiGOprotein binding  nucleus  cytoplasm  cytoskeleton  zinc ion binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  cytoskeleton  zinc ion binding  extracellular exosome  
NDEx NetworkPDLIM2
Atlas of Cancer Signalling NetworkPDLIM2
Wikipedia pathwaysPDLIM2
Orthology - Evolution
OrthoDB64236
GeneTree (enSembl)ENSG00000120913
Phylogenetic Trees/Animal Genes : TreeFamPDLIM2
HOVERGENQ96JY6
HOGENOMQ96JY6
Homologs : HomoloGenePDLIM2
Homology/Alignments : Family Browser (UCSC)PDLIM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDLIM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDLIM2
dbVarPDLIM2
ClinVarPDLIM2
1000_GenomesPDLIM2 
Exome Variant ServerPDLIM2
ExAC (Exome Aggregation Consortium)PDLIM2 (select the gene name)
Genetic variants : HAPMAP64236
Genomic Variants (DGV)PDLIM2 [DGVbeta]
DECIPHERPDLIM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDLIM2 
Mutations
ICGC Data PortalPDLIM2 
TCGA Data PortalPDLIM2 
Broad Tumor PortalPDLIM2
OASIS PortalPDLIM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDLIM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDLIM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDLIM2
DgiDB (Drug Gene Interaction Database)PDLIM2
DoCM (Curated mutations)PDLIM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDLIM2 (select a term)
intoGenPDLIM2
Cancer3DPDLIM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609722   
Orphanet
MedgenPDLIM2
Genetic Testing Registry PDLIM2
NextProtQ96JY6 [Medical]
TSGene64236
GENETestsPDLIM2
Target ValidationPDLIM2
Huge Navigator PDLIM2 [HugePedia]
snp3D : Map Gene to Disease64236
BioCentury BCIQPDLIM2
ClinGenPDLIM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64236
Chemical/Pharm GKB GenePA33159
Clinical trialPDLIM2
Miscellaneous
canSAR (ICR)PDLIM2 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDLIM2
EVEXPDLIM2
GoPubMedPDLIM2
iHOPPDLIM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 17:10:22 CEST 2017

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