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PDLIM7 (PDZ and LIM domain 7)

Identity

Alias (NCBI)LMP1
LMP3
HGNC (Hugo) PDLIM7
HGNC Alias symbENIGMA
HGNC Previous namePDZ and LIM domain 7 (enigma)
LocusID (NCBI) 9260
Atlas_Id 43666
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 177490246 and ends at 177497605 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KCNAB2 (1p36.31) / PDLIM7 (5q35.3)LMAN2 (5q35.3) / PDLIM7 (5q35.3)OLFML2A (9q33.3) / PDLIM7 (5q35.3)
PDLIM7 (5q35.3) / PDLIM7 (5q35.3)PDLIM7 (5q35.3) / PRRX1 (1q24.2)PDLIM7 (5q35.3) / UPF1 (19p13.11)
PSENEN (19q13.12) / PDLIM7 (5q35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  EBV positive DLBCL, NOS


External links

 

Nomenclature
HGNC (Hugo)PDLIM7   22958
Cards
Entrez_Gene (NCBI)PDLIM7    PDZ and LIM domain 7
AliasesLMP1; LMP3
GeneCards (Weizmann)PDLIM7
Ensembl hg19 (Hinxton)ENSG00000196923 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196923 [Gene_View]  ENSG00000196923 [Sequence]  chr5:177490246-177497605 [Contig_View]  PDLIM7 [Vega]
ICGC DataPortalENSG00000196923
TCGA cBioPortalPDLIM7
AceView (NCBI)PDLIM7
Genatlas (Paris)PDLIM7
SOURCE (Princeton)PDLIM7
Genetics Home Reference (NIH)PDLIM7
Genomic and cartography
GoldenPath hg38 (UCSC)PDLIM7  -     chr5:177490246-177497605 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDLIM7  -     5q35.3   [Description]    (hg19-Feb_2009)
GoldenPathPDLIM7 - 5q35.3 [CytoView hg19]  PDLIM7 - 5q35.3 [CytoView hg38]
ImmunoBaseENSG00000196923
Genome Data Viewer NCBIPDLIM7 [Mapview hg19]  
OMIM605903   
Gene and transcription
Genbank (Entrez)AF265209 AF345904 AF345905 AF345906 AK096826
RefSeq transcript (Entrez)NM_005451 NM_203352 NM_203353 NM_213636
Consensus coding sequences : CCDS (NCBI)PDLIM7
Gene ExpressionPDLIM7 [ NCBI-GEO ]   PDLIM7 [ EBI - ARRAY_EXPRESS ]   PDLIM7 [ SEEK ]   PDLIM7 [ MEM ]
Gene Expression Viewer (FireBrowse)PDLIM7 [ Firebrowse - Broad ]
GenevisibleExpression of PDLIM7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9260
GTEX Portal (Tissue expression)PDLIM7
Human Protein AtlasENSG00000196923-PDLIM7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NR12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NR12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NR12
PhosPhoSitePlusQ9NR12
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)    PDZ (PS50106)   
Domains : Interpro (EBI)PDZ    PDZ_sf    Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)    PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00412    pfam00595   
Domain families : Smart (EMBL)LIM (SM00132)  PDZ (SM00228)  
Conserved Domain (NCBI)PDLIM7
PDB (RSDB)2Q3G   
PDB Europe2Q3G   
PDB (PDBSum)2Q3G   
PDB (IMB)2Q3G   
Structural Biology KnowledgeBase2Q3G   
SCOP (Structural Classification of Proteins)2Q3G   
CATH (Classification of proteins structures)2Q3G   
SuperfamilyQ9NR12
AlphaFold pdb e-kbQ9NR12   
Human Protein Atlas [tissue]ENSG00000196923-PDLIM7 [tissue]
HPRD10436
Protein Interaction databases
DIP (DOE-UCLA)Q9NR12
IntAct (EBI)Q9NR12
BioGRIDPDLIM7
STRING (EMBL)PDLIM7
ZODIACPDLIM7
Ontologies - Pathways
QuickGOQ9NR12
Ontology : AmiGOossification  stress fiber  ruffle  actin binding  protein binding  nucleoplasm  cytosol  adherens junction  adherens junction  focal adhesion  receptor-mediated endocytosis  axon guidance  heart development  actin cytoskeleton  Z disc  actin cytoskeleton organization  filamentous actin  positive regulation of osteoblast differentiation  metal ion binding  muscle alpha-actinin binding  muscle structure development  
Ontology : EGO-EBIossification  stress fiber  ruffle  actin binding  protein binding  nucleoplasm  cytosol  adherens junction  adherens junction  focal adhesion  receptor-mediated endocytosis  axon guidance  heart development  actin cytoskeleton  Z disc  actin cytoskeleton organization  filamentous actin  positive regulation of osteoblast differentiation  metal ion binding  muscle alpha-actinin binding  muscle structure development  
NDEx NetworkPDLIM7
Atlas of Cancer Signalling NetworkPDLIM7
Wikipedia pathwaysPDLIM7
Orthology - Evolution
OrthoDB9260
GeneTree (enSembl)ENSG00000196923
Phylogenetic Trees/Animal Genes : TreeFamPDLIM7
Homologs : HomoloGenePDLIM7
Homology/Alignments : Family Browser (UCSC)PDLIM7
Gene fusions - Rearrangements
Fusion : QuiverPDLIM7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDLIM7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDLIM7
dbVarPDLIM7
ClinVarPDLIM7
MonarchPDLIM7
1000_GenomesPDLIM7 
Exome Variant ServerPDLIM7
GNOMAD BrowserENSG00000196923
Varsome BrowserPDLIM7
ACMGPDLIM7 variants
VarityQ9NR12
Genomic Variants (DGV)PDLIM7 [DGVbeta]
DECIPHERPDLIM7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDLIM7 
Mutations
ICGC Data PortalPDLIM7 
TCGA Data PortalPDLIM7 
Broad Tumor PortalPDLIM7
OASIS PortalPDLIM7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDLIM7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPDLIM7
Mutations and Diseases : HGMDPDLIM7
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPDLIM7
DgiDB (Drug Gene Interaction Database)PDLIM7
DoCM (Curated mutations)PDLIM7
CIViC (Clinical Interpretations of Variants in Cancer)PDLIM7
Cancer3DPDLIM7
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605903   
Orphanet
DisGeNETPDLIM7
MedgenPDLIM7
Genetic Testing Registry PDLIM7
NextProtQ9NR12 [Medical]
GENETestsPDLIM7
Target ValidationPDLIM7
Huge Navigator PDLIM7 [HugePedia]
ClinGenPDLIM7
Clinical trials, drugs, therapy
MyCancerGenomePDLIM7
Protein Interactions : CTDPDLIM7
Pharm GKB GenePA128394546
PharosQ9NR12
Clinical trialPDLIM7
Miscellaneous
canSAR (ICR)PDLIM7
HarmonizomePDLIM7
DataMed IndexPDLIM7
Probes
Litterature
PubMed109 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPDLIM7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:24:50 CEST 2021

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