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PDPN (podoplanin)

Identity

Alias (NCBI)AGGRUS
GP36
GP40
Gp38
HT1A-1
OTS8
PA2.26
T1A
T1A-2
T1A2
TI1A
HGNC (Hugo) PDPN
HGNC Alias symbT1A-2
Gp38
aggrus
GP40
PA2.26
HGNC Alias namelung type I cell membrane associated glycoprotein
LocusID (NCBI) 10630
Atlas_Id 42455
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13583757 and ends at 13617957 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PDPN (1p36.21) / PRKCB (16p12.2)PDPN (1p36.21) / VEZT (12q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PDPN   29602
Cards
Entrez_Gene (NCBI)PDPN    podoplanin
AliasesAGGRUS; GP36; GP40; Gp38; 
HT1A-1; OTS8; PA2.26; T1A; T1A-2; T1A2; TI1A
GeneCards (Weizmann)PDPN
Ensembl hg19 (Hinxton)ENSG00000162493 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162493 [Gene_View]  ENSG00000162493 [Sequence]  chr1:13583757-13617957 [Contig_View]  PDPN [Vega]
ICGC DataPortalENSG00000162493
TCGA cBioPortalPDPN
AceView (NCBI)PDPN
Genatlas (Paris)PDPN
SOURCE (Princeton)PDPN
Genetics Home Reference (NIH)PDPN
Genomic and cartography
GoldenPath hg38 (UCSC)PDPN  -     chr1:13583757-13617957 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDPN  -     1p36.21   [Description]    (hg19-Feb_2009)
GoldenPathPDPN - 1p36.21 [CytoView hg19]  PDPN - 1p36.21 [CytoView hg38]
ImmunoBaseENSG00000162493
Genome Data Viewer NCBIPDPN [Mapview hg19]  
OMIM608863   
Gene and transcription
Genbank (Entrez)AB127958 AF030427 AF030428 AF390106 AJ225022
RefSeq transcript (Entrez)NM_001006624 NM_001006625 NM_001385053 NM_006474 NM_198389
Consensus coding sequences : CCDS (NCBI)PDPN
Gene ExpressionPDPN [ NCBI-GEO ]   PDPN [ EBI - ARRAY_EXPRESS ]   PDPN [ SEEK ]   PDPN [ MEM ]
Gene Expression Viewer (FireBrowse)PDPN [ Firebrowse - Broad ]
GenevisibleExpression of PDPN in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10630
GTEX Portal (Tissue expression)PDPN
Human Protein AtlasENSG00000162493-PDPN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PDPN
Human Protein Atlas [tissue]ENSG00000162493-PDPN [tissue]
HPRD16398
Protein Interaction databases
BioGRIDPDPN
STRING (EMBL)PDPN
ZODIACPDPN
Ontologies - Pathways
Litterature
PubMed240 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPDPN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:24:51 CEST 2021

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