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PDPR (pyruvate dehydrogenase phosphatase regulatory subunit)

Identity

Alias_symbol (synonym)PDP3
Other alias
HGNC (Hugo) PDPR
LocusID (NCBI) 55066
Atlas_Id 71807
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 70113626 and ends at 70162537 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDPR   30264
Cards
Entrez_Gene (NCBI)PDPR  55066  pyruvate dehydrogenase phosphatase regulatory subunit
AliasesPDP3
GeneCards (Weizmann)PDPR
Ensembl hg19 (Hinxton)ENSG00000090857 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000090857 [Gene_View]  chr16:70113626-70162537 [Contig_View]  PDPR [Vega]
ICGC DataPortalENSG00000090857
TCGA cBioPortalPDPR
AceView (NCBI)PDPR
Genatlas (Paris)PDPR
WikiGenes55066
SOURCE (Princeton)PDPR
Genetics Home Reference (NIH)PDPR
Genomic and cartography
GoldenPath hg38 (UCSC)PDPR  -     chr16:70113626-70162537 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDPR  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblPDPR - 16q22.1 [CytoView hg19]  PDPR - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIPDPR [Mapview hg19]  PDPR [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB082521 AK000941 AK024608 AK093391 AK292502
RefSeq transcript (Entrez)NM_001322117 NM_001322118 NM_001322119 NM_017990
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDPR
Cluster EST : UnigeneHs.744043 [ NCBI ]
CGAP (NCI)Hs.744043
Alternative Splicing GalleryENSG00000090857
Gene ExpressionPDPR [ NCBI-GEO ]   PDPR [ EBI - ARRAY_EXPRESS ]   PDPR [ SEEK ]   PDPR [ MEM ]
Gene Expression Viewer (FireBrowse)PDPR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55066
GTEX Portal (Tissue expression)PDPR
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCN5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCN5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCN5
Splice isoforms : SwissVarQ8NCN5
PhosPhoSitePlusQ8NCN5
Domains : Interpro (EBI)FAD-dep_OxRdtase    FAD/NAD-binding_dom    FAO_M    GCV_T_C    GCV_T_N    GcvT/YgfZ_C    TrmE/GcvT_dom1   
Domain families : Pfam (Sanger)DAO (PF01266)    FAO_M (PF16350)    GCV_T (PF01571)    GCV_T_C (PF08669)   
Domain families : Pfam (NCBI)pfam01266    pfam16350    pfam01571    pfam08669   
Conserved Domain (NCBI)PDPR
DMDM Disease mutations55066
Blocks (Seattle)PDPR
SuperfamilyQ8NCN5
Human Protein AtlasENSG00000090857
Peptide AtlasQ8NCN5
HPRD17832
IPIIPI00168407   IPI00872462   IPI00643433   IPI00017494   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCN5
IntAct (EBI)Q8NCN5
FunCoupENSG00000090857
BioGRIDPDPR
STRING (EMBL)PDPR
ZODIACPDPR
Ontologies - Pathways
QuickGOQ8NCN5
Ontology : AmiGO[pyruvate dehydrogenase (lipoamide)] phosphatase activity  mitochondrial matrix  mitochondrial matrix  regulation of acetyl-CoA biosynthetic process from pyruvate  dephosphorylation  oxidoreductase activity  oxidation-reduction process  
Ontology : EGO-EBI[pyruvate dehydrogenase (lipoamide)] phosphatase activity  mitochondrial matrix  mitochondrial matrix  regulation of acetyl-CoA biosynthetic process from pyruvate  dephosphorylation  oxidoreductase activity  oxidation-reduction process  
NDEx NetworkPDPR
Atlas of Cancer Signalling NetworkPDPR
Wikipedia pathwaysPDPR
Orthology - Evolution
OrthoDB55066
GeneTree (enSembl)ENSG00000090857
Phylogenetic Trees/Animal Genes : TreeFamPDPR
HOVERGENQ8NCN5
HOGENOMQ8NCN5
Homologs : HomoloGenePDPR
Homology/Alignments : Family Browser (UCSC)PDPR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDPR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDPR
dbVarPDPR
ClinVarPDPR
1000_GenomesPDPR 
Exome Variant ServerPDPR
ExAC (Exome Aggregation Consortium)PDPR (select the gene name)
Genetic variants : HAPMAP55066
Genomic Variants (DGV)PDPR [DGVbeta]
DECIPHERPDPR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDPR 
Mutations
ICGC Data PortalPDPR 
TCGA Data PortalPDPR 
Broad Tumor PortalPDPR
OASIS PortalPDPR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDPR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDPR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch PDPR
DgiDB (Drug Gene Interaction Database)PDPR
DoCM (Curated mutations)PDPR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDPR (select a term)
intoGenPDPR
Cancer3DPDPR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPDPR
Genetic Testing Registry PDPR
NextProtQ8NCN5 [Medical]
TSGene55066
GENETestsPDPR
Target ValidationPDPR
Huge Navigator PDPR [HugePedia]
snp3D : Map Gene to Disease55066
BioCentury BCIQPDPR
ClinGenPDPR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55066
Chemical/Pharm GKB GenePA166048996
Clinical trialPDPR
Miscellaneous
canSAR (ICR)PDPR (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDPR
EVEXPDPR
GoPubMedPDPR
iHOPPDPR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:16 CEST 2017

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