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PDRG1 (p53 and DNA damage regulated 1)

Identity

Alias_namesC20orf126
chromosome 20 open reading frame 126
p53 and DNA-damage regulated 1
Alias_symbol (synonym)dJ310O13.3
Other aliasPDRG
HGNC (Hugo) PDRG1
LocusID (NCBI) 81572
Atlas_Id 52294
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 31944955 and ends at 31952080 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ASXL1 (20q11.21) / PDRG1 (20q11.21)ASXL1 20q11.21 / PDRG1 20q11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDRG1   16119
Cards
Entrez_Gene (NCBI)PDRG1  81572  p53 and DNA damage regulated 1
AliasesC20orf126; PDRG
GeneCards (Weizmann)PDRG1
Ensembl hg19 (Hinxton)ENSG00000088356 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000088356 [Gene_View]  chr20:31944955-31952080 [Contig_View]  PDRG1 [Vega]
ICGC DataPortalENSG00000088356
TCGA cBioPortalPDRG1
AceView (NCBI)PDRG1
Genatlas (Paris)PDRG1
WikiGenes81572
SOURCE (Princeton)PDRG1
Genetics Home Reference (NIH)PDRG1
Genomic and cartography
GoldenPath hg38 (UCSC)PDRG1  -     chr20:31944955-31952080 -  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDRG1  -     20q11.21   [Description]    (hg19-Feb_2009)
EnsemblPDRG1 - 20q11.21 [CytoView hg19]  PDRG1 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBIPDRG1 [Mapview hg19]  PDRG1 [Mapview hg38]
OMIM610789   
Gene and transcription
Genbank (Entrez)AK312021 AY286301 BC001856 BC009334 BM679702
RefSeq transcript (Entrez)NM_030815
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDRG1
Cluster EST : UnigeneHs.435755 [ NCBI ]
CGAP (NCI)Hs.435755
Alternative Splicing GalleryENSG00000088356
Gene ExpressionPDRG1 [ NCBI-GEO ]   PDRG1 [ EBI - ARRAY_EXPRESS ]   PDRG1 [ SEEK ]   PDRG1 [ MEM ]
Gene Expression Viewer (FireBrowse)PDRG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81572
GTEX Portal (Tissue expression)PDRG1
Human Protein AtlasENSG00000088356-PDRG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUG6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUG6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUG6
Splice isoforms : SwissVarQ9NUG6
PhosPhoSitePlusQ9NUG6
Domains : Interpro (EBI)PDRG1    PFD_beta-like    Prefoldin   
Domain families : Pfam (Sanger)Prefoldin_2 (PF01920)   
Domain families : Pfam (NCBI)pfam01920   
Conserved Domain (NCBI)PDRG1
DMDM Disease mutations81572
Blocks (Seattle)PDRG1
SuperfamilyQ9NUG6
Human Protein Atlas [tissue]ENSG00000088356-PDRG1 [tissue]
Peptide AtlasQ9NUG6
HPRD17833
IPIIPI00027887   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUG6
IntAct (EBI)Q9NUG6
FunCoupENSG00000088356
BioGRIDPDRG1
STRING (EMBL)PDRG1
ZODIACPDRG1
Ontologies - Pathways
QuickGOQ9NUG6
Ontology : AmiGOcytoplasm  protein folding  prefoldin complex  unfolded protein binding  
Ontology : EGO-EBIcytoplasm  protein folding  prefoldin complex  unfolded protein binding  
NDEx NetworkPDRG1
Atlas of Cancer Signalling NetworkPDRG1
Wikipedia pathwaysPDRG1
Orthology - Evolution
OrthoDB81572
GeneTree (enSembl)ENSG00000088356
Phylogenetic Trees/Animal Genes : TreeFamPDRG1
HOVERGENQ9NUG6
HOGENOMQ9NUG6
Homologs : HomoloGenePDRG1
Homology/Alignments : Family Browser (UCSC)PDRG1
Gene fusions - Rearrangements
Fusion : MitelmanASXL1/PDRG1 [20q11.21/20q11.21]  [t(20;20)(q11;q11)]  
Fusion: TCGA_MDACCASXL1 20q11.21 PDRG1 20q11.21 BRCA
Tumor Fusion PortalPDRG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDRG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDRG1
dbVarPDRG1
ClinVarPDRG1
1000_GenomesPDRG1 
Exome Variant ServerPDRG1
ExAC (Exome Aggregation Consortium)ENSG00000088356
GNOMAD BrowserENSG00000088356
Genetic variants : HAPMAP81572
Genomic Variants (DGV)PDRG1 [DGVbeta]
DECIPHERPDRG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDRG1 
Mutations
ICGC Data PortalPDRG1 
TCGA Data PortalPDRG1 
Broad Tumor PortalPDRG1
OASIS PortalPDRG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDRG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDRG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDRG1
DgiDB (Drug Gene Interaction Database)PDRG1
4a hraf../extdef.html#DoCM TARGET=DoCM>DoCM (Curated mutations)PDRG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDRG1 (select a term)
intoGenPDRG1
Cancer3DPDRG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610789   
Orphanet
DisGeNETPDRG1
MedgenPDRG1
Genetic Testing Registry PDRG1
NextProtQ9NUG6 [Medical]
TSGene81572
GENETestsPDRG1
Target ValidationPDRG1
Huge Navigator PDRG1 [HugePedia]
snp3D : Map Gene to Disease81572
BioCentury BCIQPDRG1
ClinGenPDRG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81572
Chemical/Pharm GKB GenePA25667
Clinical trialPDRG1
Miscellaneous
canSAR (ICR)PDRG1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDRG1
EVEXPDRG1
GoPubMedPDRG1
iHOPPDRG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:28:19 CET 2017

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