Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PDX1-AS1 (PDX1 antisense RNA 1)

Identity

Alias_namesPDX1 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)PLUTO
HI-LNC71
Other alias-
HGNC (Hugo) PDX1-AS1
LocusID (NCBI) 100861550
Atlas_Id 71809
Location 13q12.2  [Link to chromosome band 13q12]
Location_base_pair Starts at 28403896 and ends at 28495541 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDX1-AS1   43698
Cards
Entrez_Gene (NCBI)PDX1-AS1  100861550  PDX1 antisense RNA 1
Aliases
GeneCards (Weizmann)PDX1-AS1
Ensembl hg19 (Hinxton) [Gene_View]  chr13:28403896-28495541 [Contig_View]  PDX1-AS1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:28403896-28495541 [Contig_View]  PDX1-AS1 [Vega]
TCGA cBioPortalPDX1-AS1
AceView (NCBI)PDX1-AS1
Genatlas (Paris)PDX1-AS1
WikiGenes100861550
SOURCE (Princeton)PDX1-AS1
Genetics Home Reference (NIH)PDX1-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)PDX1-AS1  -     chr13:28403896-28495541 -  13q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PDX1-AS1  -     13q12.2   [Description]    (hg38-Dec_2013)
EnsemblPDX1-AS1 - 13q12.2 [CytoView hg19]  PDX1-AS1 - 13q12.2 [CytoView hg38]
Mapping of homologs : NCBIPDX1-AS1 [Mapview hg19]  PDX1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW340746 BX370281 HG505481
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)PDX1-AS1
Cluster EST : UnigeneHs.416201 [ NCBI ]
CGAP (NCI)Hs.416201
Gene ExpressionPDX1-AS1 [ NCBI-GEO ]   PDX1-AS1 [ EBI - ARRAY_EXPRESS ]   PDX1-AS1 [ SEEK ]   PDX1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PDX1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100861550
GTEX Portal (Tissue expression)PDX1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PDX1-AS1
DMDM Disease mutations100861550
Blocks (Seattle)PDX1-AS1
Protein Interaction databases
BioGRIDPDX1-AS1
STRING (EMBL)PDX1-AS1
ZODIACPDX1-AS1
Ontologies - Pathways
Huge Navigator PDX1-AS1 [HugePedia]
snp3D : Map Gene to Disease100861550
BioCentury BCIQPDX1-AS1
ClinGenPDX1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100861550
Clinical trialPDX1-AS1
Miscellaneous
canSAR (ICR)PDX1-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDX1-AS1
EVEXPDX1-AS1
GoPubMedPDX1-AS1
iHOPPDX1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:38:17 CET 2017

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