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PDXDC2P-NPIPB14P (nuclear pore complex-interacting protein)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 283970
Atlas_Id 79861
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 69996164 and ends at 70065818 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)PDXDC2P-NPIPB14P  283970  nuclear pore complex-interacting protein
Aliases
GeneCards (Weizmann)PDXDC2P-NPIPB14P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:69996164-70065818 [Contig_View]  PDXDC2P-NPIPB14P [Vega]
TCGA cBioPortalPDXDC2P-NPIPB14P
AceView (NCBI)PDXDC2P-NPIPB14P
Genatlas (Paris)PDXDC2P-NPIPB14P
WikiGenes283970
SOURCE (Princeton)PDXDC2P-NPIPB14P
Genetics Home Reference (NIH)PDXDC2P-NPIPB14P
Genomic and cartography
GoldenPath hg38 (UCSC)PDXDC2P-NPIPB14P  -     chr16:69996164-70065818 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDXDC2P-NPIPB14P  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblPDXDC2P-NPIPB14P - 16q22.1 [CytoView hg19]  PDXDC2P-NPIPB14P - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIPDXDC2P-NPIPB14P [Mapview hg19]  PDXDC2P-NPIPB14P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292860 AL833251 BC063633 BC144350 BX647358
RefSeq transcript (Entrez)NM_199134
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDXDC2P-NPIPB14P
Cluster EST : UnigeneHs.513695 [ NCBI ]
CGAP (NCI)Hs.513695
Gene ExpressionPDXDC2P-NPIPB14P [ NCBI-GEO ]   PDXDC2P-NPIPB14P [ EBI - ARRAY_EXPRESS ]   PDXDC2P-NPIPB14P [ SEEK ]   PDXDC2P-NPIPB14P [ MEM ]
Gene Expression Viewer (FireBrowse)PDXDC2P-NPIPB14P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283970
GTEX Portal (Tissue expression)PDXDC2P-NPIPB14P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P474   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P474  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P474
Splice isoforms : SwissVarQ6P474
Catalytic activity : Enzyme4.1.1.- [ Enzyme-Expasy ]   4.1.1.-4.1.1.- [ IntEnz-EBI ]   4.1.1.- [ BRENDA ]   4.1.1.- [ KEGG ]   
PhosPhoSitePlusQ6P474
Domains : Interpro (EBI)PyrdxlP-dep_de-COase    PyrdxlP-dep_Trfase    PyrdxlP-dep_Trfase_major_sub1    PyrdxlP-dep_Trfase_major_sub2   
Domain families : Pfam (Sanger)Pyridoxal_deC (PF00282)   
Domain families : Pfam (NCBI)pfam00282   
Conserved Domain (NCBI)PDXDC2P-NPIPB14P
DMDM Disease mutations283970
Blocks (Seattle)PDXDC2P-NPIPB14P
SuperfamilyQ6P474
Peptide AtlasQ6P474
IPIIPI00373856   
Protein Interaction databases
DIP (DOE-UCLA)Q6P474
IntAct (EBI)Q6P474
BioGRIDPDXDC2P-NPIPB14P
STRING (EMBL)PDXDC2P-NPIPB14P
ZODIACPDXDC2P-NPIPB14P
Ontologies - Pathways
QuickGOQ6P474
Ontology : AmiGOcarboxy-lyase activity  carboxylic acid metabolic process  pyridoxal phosphate binding  
Ontology : EGO-EBIcarboxy-lyase activity  carboxylic acid metabolic process  pyridoxal phosphate binding  
NDEx NetworkPDXDC2P-NPIPB14P
Atlas of Cancer Signalling NetworkPDXDC2P-NPIPB14P
Wikipedia pathwaysPDXDC2P-NPIPB14P
Orthology - Evolution
OrthoDB283970
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6P474
HOGENOMQ6P474
Homologs : HomoloGenePDXDC2P-NPIPB14P
Homology/Alignments : Family Browser (UCSC)PDXDC2P-NPIPB14P
Gene fusions - Rearrangements
Tumor Fusion PortalPDXDC2P-NPIPB14P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDXDC2P-NPIPB14P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDXDC2P-NPIPB14P
dbVarPDXDC2P-NPIPB14P
ClinVarPDXDC2P-NPIPB14P
1000_GenomesPDXDC2P-NPIPB14P 
Exome Variant ServerPDXDC2P-NPIPB14P
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP283970
Genomic Variants (DGV)PDXDC2P-NPIPB14P [DGVbeta]
DECIPHERPDXDC2P-NPIPB14P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDXDC2P-NPIPB14P 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDXDC2P-NPIPB14P
DgiDB (Drug Gene Interaction Database)PDXDC2P-NPIPB14P
DoCM (Curated mutations)PDXDC2P-NPIPB14P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDXDC2P-NPIPB14P (select a term)
intoGenPDXDC2P-NPIPB14P
Cancer3DPDXDC2P-NPIPB14P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPDXDC2P-NPIPB14P
MedgenPDXDC2P-NPIPB14P
Genetic Testing Registry PDXDC2P-NPIPB14P
NextProtQ6P474 [Medical]
TSGene283970
GENETestsPDXDC2P-NPIPB14P
Target ValidationPDXDC2P-NPIPB14P
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease283970
BioCentury BCIQPDXDC2P-NPIPB14P
ClinGenPDXDC2P-NPIPB14P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283970
Clinical trialPDXDC2P-NPIPB14P
Miscellaneous
canSAR (ICR)PDXDC2P-NPIPB14P (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDXDC2P-NPIPB14P
EVEXPDXDC2P-NPIPB14P
GoPubMedPDXDC2P-NPIPB14P
iHOPPDXDC2P-NPIPB14P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:58:36 CET 2017

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