Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PDXDC2P (pyridoxal-dependent decarboxylase domain containing 2, pseudogene)

Identity

Alias_namesPDXDC2
pyridoxal-dependent decarboxylase domain containing 2
Alias_symbol (synonym)DKFZp761H1120
Other aliasNPIP
HGNC (Hugo) PDXDC2P
LocusID (NCBI) 283970
Atlas_Id 71811
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 70030067 and ends at 70099721 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LOC613037 (16p11.2) / PDXDC2P (16q22.1)NPIP (16p11.2) / PDXDC2P (16q22.1)PDXDC2P (16q22.1) / LOC613037 (16p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDXDC2P   27559
Cards
Entrez_Gene (NCBI)PDXDC2P  283970  pyridoxal-dependent decarboxylase domain containing 2, pseudogene
AliasesNPIP; PDXDC2
GeneCards (Weizmann)PDXDC2P
Ensembl hg19 (Hinxton)ENSG00000196696 [Gene_View]  chr16:70030067-70099721 [Contig_View]  PDXDC2P [Vega]
Ensembl hg38 (Hinxton)ENSG00000196696 [Gene_View]  chr16:70030067-70099721 [Contig_View]  PDXDC2P [Vega]
ICGC DataPortalENSG00000196696
TCGA cBioPortalPDXDC2P
AceView (NCBI)PDXDC2P
Genatlas (Paris)PDXDC2P
WikiGenes283970
SOURCE (Princeton)PDXDC2P
Genetics Home Reference (NIH)PDXDC2P
Genomic and cartography
GoldenPath hg19 (UCSC)PDXDC2P  -     chr16:70030067-70099721 -  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PDXDC2P  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblPDXDC2P - 16q22.1 [CytoView hg19]  PDXDC2P - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIPDXDC2P [Mapview hg19]  PDXDC2P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292860 AL833251 BC063633 BC144350 BX647358
RefSeq transcript (Entrez)NM_199134
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)PDXDC2P
Cluster EST : UnigeneHs.513695 [ NCBI ]
CGAP (NCI)Hs.513695
Alternative Splicing GalleryENSG00000196696
Gene ExpressionPDXDC2P [ NCBI-GEO ]   PDXDC2P [ EBI - ARRAY_EXPRESS ]   PDXDC2P [ SEEK ]   PDXDC2P [ MEM ]
Gene Expression Viewer (FireBrowse)PDXDC2P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283970
GTEX Portal (Tissue expression)PDXDC2P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P474   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P474  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P474
Splice isoforms : SwissVarQ6P474
Catalytic activity : Enzyme4.1.1.- [ Enzyme-Expasy ]   4.1.1.-4.1.1.- [ IntEnz-EBI ]   4.1.1.- [ BRENDA ]   4.1.1.- [ KEGG ]   
PhosPhoSitePlusQ6P474
Domains : Interpro (EBI)PyrdxlP-dep_de-COase    PyrdxlP-dep_Trfase    PyrdxlP-dep_Trfase_major_sub1    PyrdxlP-dep_Trfase_major_sub2   
Domain families : Pfam (Sanger)Pyridoxal_deC (PF00282)   
Domain families : Pfam (NCBI)pfam00282   
Conserved Domain (NCBI)PDXDC2P
DMDM Disease mutations283970
Blocks (Seattle)PDXDC2P
SuperfamilyQ6P474
Human Protein AtlasENSG00000196696
Peptide AtlasQ6P474
IPIIPI00373856   
Protein Interaction databases
DIP (DOE-UCLA)Q6P474
IntAct (EBI)Q6P474
FunCoupENSG00000196696
BioGRIDPDXDC2P
STRING (EMBL)PDXDC2P
ZODIACPDXDC2P
Ontologies - Pathways
QuickGOQ6P474
Ontology : AmiGOcarboxy-lyase activity  carboxylic acid metabolic process  pyridoxal phosphate binding  
Ontology : EGO-EBIcarboxy-lyase activity  carboxylic acid metabolic process  pyridoxal phosphate binding  
NDEx NetworkPDXDC2P
Atlas of Cancer Signalling NetworkPDXDC2P
Wikipedia pathwaysPDXDC2P
Orthology - Evolution
OrthoDB283970
GeneTree (enSembl)ENSG00000196696
Phylogenetic Trees/Animal Genes : TreeFamPDXDC2P
HOVERGENQ6P474
HOGENOMQ6P474
Homologs : HomoloGenePDXDC2P
Homology/Alignments : Family Browser (UCSC)PDXDC2P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDXDC2P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDXDC2P
dbVarPDXDC2P
ClinVarPDXDC2P
1000_GenomesPDXDC2P 
Exome Variant ServerPDXDC2P
ExAC (Exome Aggregation Consortium)PDXDC2P (select the gene name)
Genetic variants : HAPMAP283970
Genomic Variants (DGV)PDXDC2P [DGVbeta]
DECIPHER (Syndromes)16:70030067-70099721  ENSG00000196696
CONAN: Copy Number AnalysisPDXDC2P 
Mutations
ICGC Data PortalPDXDC2P 
TCGA Data PortalPDXDC2P 
Broad Tumor PortalPDXDC2P
OASIS PortalPDXDC2P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPDXDC2P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDXDC2P
DgiDB (Drug Gene Interaction Database)PDXDC2P
DoCM (Curated mutations)PDXDC2P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDXDC2P (select a term)
intoGenPDXDC2P
Cancer3DPDXDC2P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPDXDC2P
Genetic Testing Registry PDXDC2P
NextProtQ6P474 [Medical]
TSGene283970
GENETestsPDXDC2P
Huge Navigator PDXDC2P [HugePedia]
snp3D : Map Gene to Disease283970
BioCentury BCIQPDXDC2P
ClinGenPDXDC2P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283970
Clinical trialPDXDC2P
Miscellaneous
canSAR (ICR)PDXDC2P (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDXDC2P
EVEXPDXDC2P
GoPubMedPDXDC2P
iHOPPDXDC2P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:38:17 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.