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PDZD4 (PDZ domain containing 4)

Identity

Alias_namesPDZK4
Alias_symbol (synonym)KIAA1444
LU1
FLJ34125
PDZRN4L
LNX5
Other alias
HGNC (Hugo) PDZD4
LocusID (NCBI) 57595
Atlas_Id 56591
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153802166 and ends at 153830567 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCAP31 (Xq28) / PDZD4 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDZD4   21167
Cards
Entrez_Gene (NCBI)PDZD4  57595  PDZ domain containing 4
AliasesLNX5; LU1; PDZK4; PDZRN4L
GeneCards (Weizmann)PDZD4
Ensembl hg19 (Hinxton)ENSG00000067840 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000067840 [Gene_View]  chrX:153802166-153830567 [Contig_View]  PDZD4 [Vega]
ICGC DataPortalENSG00000067840
TCGA cBioPortalPDZD4
AceView (NCBI)PDZD4
Genatlas (Paris)PDZD4
WikiGenes57595
SOURCE (Princeton)PDZD4
Genetics Home Reference (NIH)PDZD4
Genomic and cartography
GoldenPath hg38 (UCSC)PDZD4  -     chrX:153802166-153830567 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDZD4  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblPDZD4 - Xq28 [CytoView hg19]  PDZD4 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIPDZD4 [Mapview hg19]  PDZD4 [Mapview hg38]
OMIM300634   
Gene and transcription
Genbank (Entrez)AB040877 AB103478 AF085862 AK091444 AK123229
RefSeq transcript (Entrez)NM_001303512 NM_001303513 NM_001303514 NM_001303515 NM_001303516 NM_032512
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDZD4
Cluster EST : UnigeneHs.92732 [ NCBI ]
CGAP (NCI)Hs.92732
Alternative Splicing GalleryENSG00000067840
Gene ExpressionPDZD4 [ NCBI-GEO ]   PDZD4 [ EBI - ARRAY_EXPRESS ]   PDZD4 [ SEEK ]   PDZD4 [ MEM ]
Gene Expression Viewer (FireBrowse)PDZD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57595
GTEX Portal (Tissue expression)PDZD4
Human Protein AtlasENSG00000067840-PDZD4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ76G19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ76G19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ76G19
Splice isoforms : SwissVarQ76G19
PhosPhoSitePlusQ76G19
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)PDZ   
Domain families : Pfam (Sanger)PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)PDZD4
DMDM Disease mutations57595
Blocks (Seattle)PDZD4
SuperfamilyQ76G19
Human Protein Atlas [tissue]ENSG00000067840-PDZD4 [tissue]
Peptide AtlasQ76G19
HPRD06601
IPIIPI00874080   IPI01010202   IPI01009745   IPI00300860   
Protein Interaction databases
DIP (DOE-UCLA)Q76G19
IntAct (EBI)Q76G19
FunCoupENSG00000067840
BioGRIDPDZD4
STRING (EMBL)PDZD4
ZODIACPDZD4
Ontologies - Pathways
QuickGOQ76G19
Ontology : AmiGOcell cortex  
Ontology : EGO-EBIcell cortex  
NDEx NetworkPDZD4
Atlas of Cancer Signalling NetworkPDZD4
Wikipedia pathwaysPDZD4
Orthology - Evolution
OrthoDB57595
GeneTree (enSembl)ENSG00000067840
Phylogenetic Trees/Animal Genes : TreeFamPDZD4
HOVERGENQ76G19
HOGENOMQ76G19
Homologs : HomoloGenePDZD4
Homology/Alignments : Family Browser (UCSC)PDZD4
Gene fusions - Rearrangements
Tumor Fusion PortalPDZD4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDZD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDZD4
dbVarPDZD4
ClinVarPDZD4
1000_GenomesPDZD4 
Exome Variant ServerPDZD4
ExAC (Exome Aggregation Consortium)ENSG00000067840
GNOMAD BrowserENSG00000067840
Genetic variants : HAPMAP57595
Genomic Variants (DGV)PDZD4 [DGVbeta]
DECIPHERPDZD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDZD4 
Mutations
ICGC Data PortalPDZD4 
TCGA Data PortalPDZD4 
Broad Tumor PortalPDZD4
OASIS PortalPDZD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDZD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDZD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDZD4
DgiDB (Drug Gene Interaction Database)PDZD4
DoCM (Curated mutations)PDZD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDZD4 (select a term)
intoGenPDZD4
Cancer3DPDZD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300634   
Orphanet
DisGeNETPDZD4
MedgenPDZD4
Genetic Testing Registry PDZD4
NextProtQ76G19 [Medical]
TSGene57595
GENETestsPDZD4
Target ValidationPDZD4
Huge Navigator PDZD4 [HugePedia]
snp3D : Map Gene to Disease57595
BioCentury BCIQPDZD4
ClinGenPDZD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57595
Chemical/Pharm GKB GenePA134896313
Clinical trialPDZD4
Miscellaneous
canSAR (ICR)PDZD4 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDZD4
EVEXPDZD4
GoPubMedPDZD4
iHOPPDZD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:28:20 CET 2017

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