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PDZD9 (PDZ domain containing 9)

Identity

Alias_namesC16orf65
chromosome 16 open reading frame 65
Alias_symbol (synonym)MGC50721
Other alias
HGNC (Hugo) PDZD9
LocusID (NCBI) 255762
Atlas_Id 71819
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 21983865 and ends at 22001110 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PDZD9   28740
Cards
Entrez_Gene (NCBI)PDZD9  255762  PDZ domain containing 9
AliasesC16orf65
GeneCards (Weizmann)PDZD9
Ensembl hg19 (Hinxton)ENSG00000155714 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155714 [Gene_View]  chr16:21983865-22001110 [Contig_View]  PDZD9 [Vega]
ICGC DataPortalENSG00000155714
TCGA cBioPortalPDZD9
AceView (NCBI)PDZD9
Genatlas (Paris)PDZD9
WikiGenes255762
SOURCE (Princeton)PDZD9
Genetics Home Reference (NIH)PDZD9
Genomic and cartography
GoldenPath hg38 (UCSC)PDZD9  -     chr16:21983865-22001110 -  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDZD9  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblPDZD9 - 16p12.2 [CytoView hg19]  PDZD9 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBIPDZD9 [Mapview hg19]  PDZD9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC021724 BC028605 BC039562 BX100380 DB450393
RefSeq transcript (Entrez)NM_173806
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PDZD9
Cluster EST : UnigeneHs.98244 [ NCBI ]
CGAP (NCI)Hs.98244
Alternative Splicing GalleryENSG00000155714
Gene ExpressionPDZD9 [ NCBI-GEO ]   PDZD9 [ EBI - ARRAY_EXPRESS ]   PDZD9 [ SEEK ]   PDZD9 [ MEM ]
Gene Expression Viewer (FireBrowse)PDZD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255762
GTEX Portal (Tissue expression)PDZD9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXQ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXQ8
Splice isoforms : SwissVarQ8IXQ8
PhosPhoSitePlusQ8IXQ8
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)PDZ   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)PDZD9
DMDM Disease mutations255762
Blocks (Seattle)PDZD9
SuperfamilyQ8IXQ8
Human Protein AtlasENSG00000155714
Peptide AtlasQ8IXQ8
HPRD14667
IPIIPI00816226   IPI00176099   IPI00978053   IPI00974287   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXQ8
IntAct (EBI)Q8IXQ8
FunCoupENSG00000155714
BioGRIDPDZD9
STRING (EMBL)PDZD9
ZODIACPDZD9
Ontologies - Pathways
QuickGOQ8IXQ8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPDZD9
Atlas of Cancer Signalling NetworkPDZD9
Wikipedia pathwaysPDZD9
Orthology - Evolution
OrthoDB255762
GeneTree (enSembl)ENSG00000155714
Phylogenetic Trees/Animal Genes : TreeFamPDZD9
HOVERGENQ8IXQ8
HOGENOMQ8IXQ8
Homologs : HomoloGenePDZD9
Homology/Alignments : Family Browser (UCSC)PDZD9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDZD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDZD9
dbVarPDZD9
ClinVarPDZD9
1000_GenomesPDZD9 
Exome Variant ServerPDZD9
ExAC (Exome Aggregation Consortium)PDZD9 (select the gene name)
Genetic variants : HAPMAP255762
Genomic Variants (DGV)PDZD9 [DGVbeta]
DECIPHERPDZD9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPDZD9 
Mutations
ICGC Data PortalPDZD9 
TCGA Data PortalPDZD9 
Broad Tumor PortalPDZD9
OASIS PortalPDZD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPDZD9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPDZD9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDZD9
DgiDB (Drug Gene Interaction Database)PDZD9
DoCM (Curated mutations)PDZD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDZD9 (select a term)
intoGenPDZD9
Cancer3DPDZD9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPDZD9
Genetic Testing Registry PDZD9
NextProtQ8IXQ8 [Medical]
TSGene255762
GENETestsPDZD9
Target ValidationPDZD9
Huge Navigator PDZD9 [HugePedia]
snp3D : Map Gene to Disease255762
BioCentury BCIQPDZD9
ClinGenPDZD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255762
Chemical/Pharm GKB GenePA165450481
Clinical trialPDZD9
Miscellaneous
canSAR (ICR)PDZD9 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDZD9
EVEXPDZD9
GoPubMedPDZD9
iHOPPDZD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:18 CEST 2017

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