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PDZK1P1 (PDZ domain containing 1 pseudogene 1)

Identity

Alias_namesPDZK1P2
PDZ domain containing 1 pseudogene 2
Alias_symbol (synonym)OTTHUMT00000038524
OTTHUMG00000074107
Other alias
HGNC (Hugo) PDZK1P1
LocusID (NCBI) 100034743
Atlas_Id 71820
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 145924388 and ends at 145945477 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PDZK1P1   31974
Cards
Entrez_Gene (NCBI)PDZK1P1  100034743  PDZ domain containing 1 pseudogene 1
AliasesOTTHUMT00000038524; PDZK1P2
GeneCards (Weizmann)PDZK1P1
Ensembl hg19 (Hinxton) [Gene_View]  chr1:145924388-145945477 [Contig_View]  PDZK1P1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:145924388-145945477 [Contig_View]  PDZK1P1 [Vega]
TCGA cBioPortalPDZK1P1
AceView (NCBI)PDZK1P1
Genatlas (Paris)PDZK1P1
WikiGenes100034743
SOURCE (Princeton)PDZK1P1
Genetics Home Reference (NIH)PDZK1P1
Genomic and cartography
GoldenPath hg19 (UCSC)PDZK1P1  -     chr1:145924388-145945477 -  1q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PDZK1P1  -     1q21.1   [Description]    (hg38-Dec_2013)
EnsemblPDZK1P1 - 1q21.1 [CytoView hg19]  PDZK1P1 - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBIPDZK1P1 [Mapview hg19]  PDZK1P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126719 DA085292 HG492682 LK938626
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_005958 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)PDZK1P1
Cluster EST : UnigeneHs.696575 [ NCBI ]
CGAP (NCI)Hs.696575
Gene ExpressionPDZK1P1 [ NCBI-GEO ]   PDZK1P1 [ EBI - ARRAY_EXPRESS ]   PDZK1P1 [ SEEK ]   PDZK1P1 [ MEM ]
Gene Expression Viewer (FireBrowse)PDZK1P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100034743
GTEX Portal (Tissue expression)PDZK1P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MUH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MUH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MUH7
Splice isoforms : SwissVarA8MUH7
PhosPhoSitePlusA8MUH7
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)PDZ   
Domain families : Pfam (Sanger)PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)PDZK1P1
DMDM Disease mutations100034743
Blocks (Seattle)PDZK1P1
SuperfamilyA8MUH7
Peptide AtlasA8MUH7
Protein Interaction databases
DIP (DOE-UCLA)A8MUH7
IntAct (EBI)A8MUH7
BioGRIDPDZK1P1
STRING (EMBL)PDZK1P1
ZODIACPDZK1P1
Ontologies - Pathways
QuickGOA8MUH7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPDZK1P1
Atlas of Cancer Signalling NetworkPDZK1P1
Wikipedia pathwaysPDZK1P1
Orthology - Evolution
OrthoDB100034743
Phylogenetic Trees/Animal Genes : TreeFamPDZK1P1
HOVERGENA8MUH7
HOGENOMA8MUH7
Homologs : HomoloGenePDZK1P1
Homology/Alignments : Family Browser (UCSC)PDZK1P1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPDZK1P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PDZK1P1
dbVarPDZK1P1
ClinVarPDZK1P1
1000_GenomesPDZK1P1 
Exome Variant ServerPDZK1P1
ExAC (Exome Aggregation Consortium)PDZK1P1 (select the gene name)
Genetic variants : HAPMAP100034743
Genomic Variants (DGV)PDZK1P1 [DGVbeta]
DECIPHER (Syndromes)1:145924388-145945477  
CONAN: Copy Number AnalysisPDZK1P1 
Mutations
ICGC Data PortalPDZK1P1 
TCGA Data PortalPDZK1P1 
Broad Tumor PortalPDZK1P1
OASIS PortalPDZK1P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPDZK1P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PDZK1P1
DgiDB (Drug Gene Interaction Database)PDZK1P1
DoCM (Curated mutations)PDZK1P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PDZK1P1 (select a term)
intoGenPDZK1P1
Cancer3DPDZK1P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPDZK1P1
Genetic Testing Registry PDZK1P1
NextProtA8MUH7 [Medical]
TSGene100034743
GENETestsPDZK1P1
Huge Navigator PDZK1P1 [HugePedia]
snp3D : Map Gene to Disease100034743
BioCentury BCIQPDZK1P1
ClinGenPDZK1P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100034743
Clinical trialPDZK1P1
Miscellaneous
canSAR (ICR)PDZK1P1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePDZK1P1
EVEXPDZK1P1
GoPubMedPDZK1P1
iHOPPDZK1P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:18 CET 2017

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