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PEBP4 (phosphatidylethanolamine binding protein 4)

Identity

Alias_symbol (synonym)MGC22776
CORK1
hPEBP4
Other aliasCORK-1
GWTM1933
HEL-S-300
PEBP-4
PRO4408
HGNC (Hugo) PEBP4
LocusID (NCBI) 157310
Atlas_Id 46027
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 22570765 and ends at 22785421 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AL139022.1 () / PEBP4 (8p21.3)BIN3 (8p21.3) / PEBP4 (8p21.3)PEBP4 (8p21.3) / APLF (2p13.3)
PEBP4 (8p21.3) / HYOU1 (11q23.3)PEBP4 (8p21.3) / UNC5D (8p12)AL139022.1 PEBP4 8p21.3
BIN3 8p21.3 / PEBP4 8p21.3PEBP4 8p21.3 / UNC5D 8p12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PEBP4   28319
Cards
Entrez_Gene (NCBI)PEBP4  157310  phosphatidylethanolamine binding protein 4
AliasesCORK-1; CORK1; GWTM1933; HEL-S-300; 
PEBP-4; PRO4408; hPEBP4
GeneCards (Weizmann)PEBP4
Ensembl hg19 (Hinxton)ENSG00000134020 [Gene_View]  chr8:22570765-22785421 [Contig_View]  PEBP4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000134020 [Gene_View]  chr8:22570765-22785421 [Contig_View]  PEBP4 [Vega]
ICGC DataPortalENSG00000134020
TCGA cBioPortalPEBP4
AceView (NCBI)PEBP4
Genatlas (Paris)PEBP4
WikiGenes157310
SOURCE (Princeton)PEBP4
Genetics Home Reference (NIH)PEBP4
Genomic and cartography
GoldenPath hg19 (UCSC)PEBP4  -     chr8:22570765-22785421 -  8p21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PEBP4  -     8p21.3   [Description]    (hg38-Dec_2013)
EnsemblPEBP4 - 8p21.3 [CytoView hg19]  PEBP4 - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBIPEBP4 [Mapview hg19]  PEBP4 [Mapview hg38]
OMIM612473   
Gene and transcription
Genbank (Entrez)AY037148 AY359109 AY730275 BC020779 BF853000
RefSeq transcript (Entrez)NM_144962
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)PEBP4
Cluster EST : UnigeneHs.491242 [ NCBI ]
CGAP (NCI)Hs.491242
Alternative Splicing GalleryENSG00000134020
Gene ExpressionPEBP4 [ NCBI-GEO ]   PEBP4 [ EBI - ARRAY_EXPRESS ]   PEBP4 [ SEEK ]   PEBP4 [ MEM ]
Gene Expression Viewer (FireBrowse)PEBP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157310
GTEX Portal (Tissue expression)PEBP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96S96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96S96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96S96
Splice isoforms : SwissVarQ96S96
PhosPhoSitePlusQ96S96
Domaine pattern : Prosite (Expaxy)PBP (PS01220)   
Domains : Interpro (EBI)Phosphotidylethanolamine-bd_CS    PtdEtn-bd_prot_PEBP   
Domain families : Pfam (Sanger)PBP (PF01161)   
Domain families : Pfam (NCBI)pfam01161   
Conserved Domain (NCBI)PEBP4
DMDM Disease mutations157310
Blocks (Seattle)PEBP4
SuperfamilyQ96S96
Human Protein AtlasENSG00000134020
Peptide AtlasQ96S96
HPRD11424
IPIIPI00163563   IPI00973725   
Protein Interaction databases
DIP (DOE-UCLA)Q96S96
IntAct (EBI)Q96S96
FunCoupENSG00000134020
BioGRIDPEBP4
STRING (EMBL)PEBP4
ZODIACPEBP4
Ontologies - Pathways
QuickGOQ96S96
Ontology : AmiGOprotein binding  lysosome  extracellular exosome  
Ontology : EGO-EBIprotein binding  lysosome  extracellular exosome  
NDEx NetworkPEBP4
Atlas of Cancer Signalling NetworkPEBP4
Wikipedia pathwaysPEBP4
Orthology - Evolution
OrthoDB157310
GeneTree (enSembl)ENSG00000134020
Phylogenetic Trees/Animal Genes : TreeFamPEBP4
HOVERGENQ96S96
HOGENOMQ96S96
Homologs : HomoloGenePEBP4
Homology/Alignments : Family Browser (UCSC)PEBP4
Gene fusions - Rearrangements
Fusion : MitelmanBIN3/PEBP4 [8p21.3/8p21.3]  [t(8;8)(p21;p21)]  
Fusion : MitelmanPEBP4/UNC5D [8p21.3/8p12]  [t(8;8)(p12;p21)]  
Fusion: TCGAAL139022.1 PEBP4 8p21.3 BRCA
Fusion: TCGABIN3 8p21.3 PEBP4 8p21.3 BRCA LUAD
Fusion: TCGAPEBP4 8p21.3 UNC5D 8p12 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPEBP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PEBP4
dbVarPEBP4
ClinVarPEBP4
1000_GenomesPEBP4 
Exome Variant ServerPEBP4
ExAC (Exome Aggregation Consortium)PEBP4 (select the gene name)
Genetic variants : HAPMAP157310
Genomic Variants (DGV)PEBP4 [DGVbeta]
DECIPHER (Syndromes)8:22570765-22785421  ENSG00000134020
CONAN: Copy Number AnalysisPEBP4 
Mutations
ICGC Data PortalPEBP4 
TCGA Data PortalPEBP4 
Broad Tumor PortalPEBP4
OASIS PortalPEBP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPEBP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPEBP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PEBP4
DgiDB (Drug Gene Interaction Database)PEBP4
DoCM (Curated mutations)PEBP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PEBP4 (select a term)
intoGenPEBP4
Cancer3DPEBP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612473   
Orphanet
MedgenPEBP4
Genetic Testing Registry PEBP4
NextProtQ96S96 [Medical]
TSGene157310
GENETestsPEBP4
Huge Navigator PEBP4 [HugePedia]
snp3D : Map Gene to Disease157310
BioCentury BCIQPEBP4
ClinGenPEBP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157310
Chemical/Pharm GKB GenePA165585814
Clinical trialPEBP4
Miscellaneous
canSAR (ICR)PEBP4 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePEBP4
EVEXPEBP4
GoPubMedPEBP4
iHOPPEBP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:20:58 CET 2017

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