Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PEBP4 (phosphatidylethanolamine-binding protein 4)

Identity

Other namesCORK-1
CORK1
GWTM1933
PEBP-4
PRO4408
hPEBP4
HGNC (Hugo) PEBP4
LocusID (NCBI) 157310
Location 8p21.3
Location_base_pair Starts at 22570765 and ends at 22785421 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PEBP4   28319
Entrez_Gene (NCBI)PEBP4  157310  phosphatidylethanolamine-binding protein 4
Cards
GeneCards (Weizmann)PEBP4
Ensembl (Hinxton)ENSG00000134020 [Gene_View]  chr8:22570765-22785421 [Contig_View]  PEBP4 [Vega]
AceView (NCBI)PEBP4
Genatlas (Paris)PEBP4
SOURCE (Stanford)NM_144962
Genomic and cartography
GoldenPath (UCSC)PEBP4  -  8p21.3   chr8:22570765-22785421 -  8p21.3   [Description]    (hg19-Feb_2009)
EnsemblPEBP4 - 8p21.3 [CytoView]
Mapping of homologs : NCBIPEBP4 [Mapview]
OMIM612473   
Gene and transcription
Genbank (Entrez)AY037148 AY359109 AY730275 BC020779 BF853000
RefSeq transcript (SRS)NM_144962
RefSeq transcript (Entrez)NM_144962
RefSeq genomic (SRS)AC_000140 NC_000008 NC_018919 NT_167187 NW_001839127 NW_004078035
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NT_167187 NW_001839127 NW_004078035
Consensus coding sequences : CCDS (NCBI)PEBP4
Cluster EST : UnigeneHs.491242 [ SRS ] Hs.491242 [ NCBI ]
CGAP (NCI)Hs.491242
Alternative Splicing : Fast-db (Paris)GSHG0029460
Alternative Splicing GalleryENSG00000134020
Gene ExpressionPEBP4 [ NCBI-GEO ]   PEBP4 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96S96 (SRS) Q96S96 (Uniprot)
NextProtQ96S96
With graphics : InterProQ96S96
Splice isoforms : SwissVarQ96S96(Swissvar)
Domaine pattern : Prosite (SRS)PBP (PS01220)   
Domaine pattern : Prosite (Expaxy)PBP (PS01220)   
Domains : Interpro (SRS)Phosphotidylethanolamine-bd_CS    PtdEtn-bd_prot_PEBP   
Domains : Interpro (EBI)Phosphotidylethanolamine-bd_CS    PtdEtn-bd_prot_PEBP   
Related proteins : CluSTrQ96S96
Domain families : Pfam (SRS)PBP (PF01161)   
Domain families : Pfam (Sanger)PBP (PF01161)   
Domain families : Pfam (NCBI)pfam01161   
DMDM157310
Blocks (Seattle)Q96S96
Human Protein AtlasENSG00000134020
HPRD11424
IPIIPI00163563   IPI00973725   
Protein Interaction databases
DIP (DOE-UCLA)Q96S96
IntAct (EBI)Q96S96
FunCoupENSG00000134020
REACTOMEPEBP4
Protein Interaction Database157310
BioGRIDPEBP4
InParanoidQ96S96
Interologous Interaction database Q96S96
IntegromeDBPEBP4
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PEBP4
SNP (GeneSNP Utah)PEBP4
SNP : HGBasePEBP4
Genetic variants : HAPMAPPEBP4
Somatic Mutations in Cancer : COSMICPEBP4 
CONAN: Copy Number AnalysisPEBP4 
Mutations and Diseases : HGMDPEBP4
OMIM612473   
GENETests612473   
Disease Genetic AssociationPEBP4
Huge Navigator PEBP4 [HugePedia]  PEBP4 [HugeCancerGEM]
Genomic VariantsPEBP4  PEBP4 [DGVbeta]
snp3D : Map Gene to Disease157310
General knowledge
Homologs : HomoloGenePEBP4
Homology/Alignments : Family Browser (UCSC)PEBP4
Phylogenetic Trees/Animal Genes : TreeFamPEBP4
Chemical/Protein Interactions : CTD157310
Chemical/Pharm GKB GenePA165585814
Clinical trialPEBP4
Cancer Resource (Charite)ENSG00000134020
Ontology : AmiGOlysosome  
Ontology : EGO-EBIlysosome  
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
PubGenePEBP4
iHOPPEBP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:18:52 CEST 2013
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