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PECR (peroxisomal trans-2-enoyl-CoA reductase)

Identity

Alias_symbol (synonym)HSA250303
TERP
SDR29C1
Other aliasDCRRP
HPDHASE
PVIARL
HGNC (Hugo) PECR
LocusID (NCBI) 55825
Atlas_Id 71823
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 216903111 and ends at 216946539 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PECR   18281
Cards
Entrez_Gene (NCBI)PECR  55825  peroxisomal trans-2-enoyl-CoA reductase
AliasesDCRRP; HPDHASE; HSA250303; PVIARL; 
SDR29C1; TERP
GeneCards (Weizmann)PECR
Ensembl hg19 (Hinxton)ENSG00000115425 [Gene_View]  chr2:216903111-216946539 [Contig_View]  PECR [Vega]
Ensembl hg38 (Hinxton)ENSG00000115425 [Gene_View]  chr2:216903111-216946539 [Contig_View]  PECR [Vega]
ICGC DataPortalENSG00000115425
TCGA cBioPortalPECR
AceView (NCBI)PECR
Genatlas (Paris)PECR
WikiGenes55825
SOURCE (Princeton)PECR
Genetics Home Reference (NIH)PECR
Genomic and cartography
GoldenPath hg19 (UCSC)PECR  -     chr2:216903111-216946539 -  2q35   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PECR  -     2q35   [Description]    (hg38-Dec_2013)
EnsemblPECR - 2q35 [CytoView hg19]  PECR - 2q35 [CytoView hg38]
Mapping of homologs : NCBIPECR [Mapview hg19]  PECR [Mapview hg38]
OMIM605843   
Gene and transcription
Genbank (Entrez)AF212234 AF232009 AJ250303 AK296208 AK315795
RefSeq transcript (Entrez)NM_018441
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)PECR
Cluster EST : UnigeneHs.281680 [ NCBI ]
CGAP (NCI)Hs.281680
Alternative Splicing GalleryENSG00000115425
Gene ExpressionPECR [ NCBI-GEO ]   PECR [ EBI - ARRAY_EXPRESS ]   PECR [ SEEK ]   PECR [ MEM ]
Gene Expression Viewer (FireBrowse)PECR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55825
GTEX Portal (Tissue expression)PECR
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BY49   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BY49  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BY49
Splice isoforms : SwissVarQ9BY49
Catalytic activity : Enzyme1.3.1.38 [ Enzyme-Expasy ]   1.3.1.381.3.1.38 [ IntEnz-EBI ]   1.3.1.38 [ BRENDA ]   1.3.1.38 [ KEGG ]   
PhosPhoSitePlusQ9BY49
Domains : Interpro (EBI)Glc/ribitol_DH    NAD(P)-bd_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PECR
DMDM Disease mutations55825
Blocks (Seattle)PECR
PDB (SRS)1YXM   
PDB (PDBSum)1YXM   
PDB (IMB)1YXM   
PDB (RSDB)1YXM   
Structural Biology KnowledgeBase1YXM   
SCOP (Structural Classification of Proteins)1YXM   
CATH (Classification of proteins structures)1YXM   
SuperfamilyQ9BY49
Human Protein AtlasENSG00000115425
Peptide AtlasQ9BY49
HPRD09320
IPIIPI00554710   IPI00744627   IPI00909566   
Protein Interaction databases
DIP (DOE-UCLA)Q9BY49
IntAct (EBI)Q9BY49
FunCoupENSG00000115425
BioGRIDPECR
STRING (EMBL)PECR
ZODIACPECR
Ontologies - Pathways
QuickGOQ9BY49
Ontology : AmiGOreceptor binding  mitochondrion  peroxisome  peroxisomal membrane  fatty acid biosynthetic process  2,4-dienoyl-CoA reductase (NADPH) activity  trans-2-enoyl-CoA reductase (NADPH) activity  phytol metabolic process  intracellular membrane-bounded organelle  oxidation-reduction process  
Ontology : EGO-EBIreceptor binding  mitochondrion  peroxisome  peroxisomal membrane  fatty acid biosynthetic process  2,4-dienoyl-CoA reductase (NADPH) activity  trans-2-enoyl-CoA reductase (NADPH) activity  phytol metabolic process  intracellular membrane-bounded organelle  oxidation-reduction process  
Pathways : KEGGBiosynthesis of unsaturated fatty acids    Peroxisome   
NDEx NetworkPECR
Atlas of Cancer Signalling NetworkPECR
Wikipedia pathwaysPECR
Orthology - Evolution
OrthoDB55825
GeneTree (enSembl)ENSG00000115425
Phylogenetic Trees/Animal Genes : TreeFamPECR
HOVERGENQ9BY49
HOGENOMQ9BY49
Homologs : HomoloGenePECR
Homology/Alignments : Family Browser (UCSC)PECR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPECR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PECR
dbVarPECR
ClinVarPECR
1000_GenomesPECR 
Exome Variant ServerPECR
ExAC (Exome Aggregation Consortium)PECR (select the gene name)
Genetic variants : HAPMAP55825
Genomic Variants (DGV)PECR [DGVbeta]
DECIPHER (Syndromes)2:216903111-216946539  ENSG00000115425
CONAN: Copy Number AnalysisPECR 
Mutations
ICGC Data PortalPECR 
TCGA Data PortalPECR 
Broad Tumor PortalPECR
OASIS PortalPECR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPECR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPECR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PECR
DgiDB (Drug Gene Interaction Database)PECR
DoCM (Curated mutations)PECR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PECR (select a term)
intoGenPECR
Cancer3DPECR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605843   
Orphanet
MedgenPECR
Genetic Testing Registry PECR
NextProtQ9BY49 [Medical]
TSGene55825
GENETestsPECR
Huge Navigator PECR [HugePedia]
snp3D : Map Gene to Disease55825
BioCentury BCIQPECR
ClinGenPECR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55825
Chemical/Pharm GKB GenePA134967510
Clinical trialPECR
Miscellaneous
canSAR (ICR)PECR (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePECR
EVEXPECR
GoPubMedPECR
iHOPPECR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:19 CET 2017

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